Temporal Hierarchical Clustering

We study hierarchical clusterings of metric spaces that change over time. This is a natural geo- metric primitive for the analysis of dynamic data sets. Specifically, we introduce and study the problem of finding a temporally coherent sequence of hierarchical clusterings from a sequence of unlabeled point sets. We encode the clustering objective by embedding each point set into an ultrametric space, which naturally induces a hierarchical clustering of the set of points. We enforce temporal coherence among the embeddings by finding correspondences between successive pairs of ultrametric spaces which exhibit small distortion in the Gromov-Hausdorff sense. We present both upper and lower bounds on the approximability of the resulting optimization problems

Element-centric clustering comparison unifies overlaps and hierarchy

Clustering is one of the most universal approaches for understanding complex data. A pivotal aspect of clustering analysis is quantitatively comparing clusterings; clustering comparison is the basis for many tasks such as clustering evaluation, consensus clustering, and tracking the temporal evolution of clusters. In particular, the extrinsic evaluation of clustering methods requires comparing the uncovered clusterings to planted clusterings or known metadata. Yet, as we demonstrate, existing clustering comparison measures have critical biases which undermine their usefulness, and no measure accommodates both overlapping and hierarchical clusterings. Here we unify the comparison of disjoint, overlapping, and hierarchically structured clusterings by proposing a new element-centric framework: elements are compared based on the relationships induced by the cluster structure, as opposed to the traditional cluster-centric philosophy. We demonstrate that, in contrast to standard clustering similarity measures, our framework does not suffer from critical biases and naturally provides unique insights into how the clusterings differ. We illustrate the strengths of our framework by revealing new insights into the organization of clusters in two applications: the improved classification of schizophrenia based on the overlapping and hierarchical community structure of fMRI brain networks, and the disentanglement of various social homophily factors in Facebook social networks. The universality of clustering suggests far-reaching impact of our framework throughout all areas of science

Coherency in space of lake and river temperature and water quality records

Environmental time series observed over 100’s of monitoring locations usually possess some spatial structure in terms of common patterns throughout time, commonly described as temporal coherence. This paper will apply, develop and compare two methods for clustering time series on the basis of their patterns over time. The first approach treats the time series as functional data and applies hierarchical clustering while the second uses a state-space model based clustering approach. Both methods are developed to incorporate spatial correlation and stopping criteria are investigated to identify an appropriate number of clusters. The methods are applied to Total Organic Carbon data from river sites across Scotland

Adaptive Evolutionary Clustering

In many practical applications of clustering, the objects to be clustered evolve over time, and a clustering result is desired at each time step. In such applications, evolutionary clustering typically outperforms traditional static clustering by producing clustering results that reflect long-term trends while being robust to short-term variations. Several evolutionary clustering algorithms have recently been proposed, often by adding a temporal smoothness penalty to the cost function of a static clustering method. In this paper, we introduce a different approach to evolutionary clustering by accurately tracking the time-varying proximities between objects followed by static clustering. We present an evolutionary clustering framework that adaptively estimates the optimal smoothing parameter using shrinkage estimation, a statistical approach that improves a naive estimate using additional information. The proposed framework can be used to extend a variety of static clustering algorithms, including hierarchical, k-means, and spectral clustering, into evolutionary clustering algorithms. Experiments on synthetic and real data sets indicate that the proposed framework outperforms static clustering and existing evolutionary clustering algorithms in many scenarios.Comment: To appear in Data Mining and Knowledge Discovery, MATLAB toolbox available at http://tbayes.eecs.umich.edu/xukevin/affec

Similarity based hierarchical clustering of physiological parameters for the identification of health states - a feasibility study

This paper introduces a new unsupervised method for the clustering of physiological data into health states based on their similarity. We propose an iterative hierarchical clustering approach that combines health states according to a similarity constraint to new arbitrary health states. We applied method to experimental data in which the physical strain of subjects was systematically varied. We derived health states based on parameters extracted from ECG data. The occurrence of health states shows a high temporal correlation to the experimental phases of the physical exercise. We compared our method to other clustering algorithms and found a significantly higher accuracy with respect to the identification of health states.Comment: 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC

Chimera states in networks of Van der Pol oscillators with hierarchical connectivities

This article may be downloaded for personal use only. Any other use requires prior permission of the author and AIP Publishing. This article appeared in Chaos 26, 094825 (2016) and may be found at https://doi.org/10.1063/1.4962913.Chimera states are complex spatio-temporal patterns that consist of coexisting domains of coherent and incoherent dynamics. We analyse chimera states in ring networks of Van der Pol oscillators with hierarchical coupling topology. We investigate the stepwise transition from a nonlocal to a hierarchical topology and propose the network clustering coefficient as a measure to establish a link between the existence of chimera states and the compactness of the initial base pattern of a hierarchical topology; we show that a large clustering coefficient promotes the occurrence of chimeras. Depending on the level of hierarchy and base pattern, we obtain chimera states with different numbers of incoherent domains. We investigate the chimera regimes as a function of coupling strength and nonlinearity parameter of the individual oscillators. The analysis of a network with larger base pattern resulting in larger clustering coefficient reveals two different types of chimera states and highlights the increasing role of amplitude dynamics. Chimera states are an example of intriguing partial synchronization patterns appearing in networks of identical oscillators. They exhibit a hybrid structure combining coexisting spatial domains of coherent (synchronized) and incoherent (desynchronized) dynamics.1,2 Recent studies have demonstrated the emergence of chimera states in a variety of topologies and for different types of individual dynamics. In this paper, we analyze chimera states in networks with complex coupling topologies arising in neuroscience. We provide a systematic analysis of the transition from nonlocal to hierarchical (quasi-fractal) connectivities in ring networks of identical Van der Pol oscillators and use the clustering coefficient and the symmetry properties to classify different topologies with respect to the occurrence of chimera states. We show that symmetric connectivities with large clustering coefficients promote the emergence of chimera states, while they are suppressed by slight topological asymmetries or small clustering coefficient.DFG, 163436311, SFB 910: Kontrolle selbstorganisierender nichtlinearer Systeme: Theoretische Methoden und Anwendungskonzept