Disconnected Skeleton: Shape at its Absolute Scale

We present a new skeletal representation along with a matching framework to address the deformable shape recognition problem. The disconnectedness arises as a result of excessive regularization that we use to describe a shape at an attainably coarse scale. Our motivation is to rely on the stable properties of the shape instead of inaccurately measured secondary details. The new representation does not suffer from the common instability problems of traditional connected skeletons, and the matching process gives quite successful results on a diverse database of 2D shapes. An important difference of our approach from the conventional use of the skeleton is that we replace the local coordinate frame with a global Euclidean frame supported by additional mechanisms to handle articulations and local boundary deformations. As a result, we can produce descriptions that are sensitive to any combination of changes in scale, position, orientation and articulation, as well as invariant ones.Comment: The work excluding {\S}V and {\S}VI has first appeared in 2005 ICCV: Aslan, C., Tari, S.: An Axis-Based Representation for Recognition. In ICCV(2005) 1339- 1346.; Aslan, C., : Disconnected Skeletons for Shape Recognition. Masters thesis, Department of Computer Engineering, Middle East Technical University, May 200

The Symmetrical Immune Network Theory and a New HIV Vaccine Concept

The symmetrical immune network theory is based on Jerne’s network hypothesis. An improved version of the theory is presented. The theory is characterized by symmetrical stimulatory, inhibitory and killing interactions between idiotypic and antiidiotypic immune system components. In this version killing is ascribed to IgM antibodies, while IgG antibodies are stimulatory. In the symmetrical immune network theory T cells make specific T cell factors, that have a single V region, and are cytophilic for non-specific accessory cells (A cells, including macrophages and monocytes) and play a role in the system switching between stable steady states. A recurring theme in the theory is the concept of co selection. Co-selection is the mutual positive selection of individual members from within two diverse populations, such that selection of members within each population is dependent on interaction with (recognition of) one or more members within the other population. Prior to exposure to an antigen, antigen-specific and antiidiotypic T cells are equally diverse. This equality is a form of symmetry. Immune responses with the production of IgG involve co selection of the antigen-specific and antiidiotypic classes with the breaking of this diversity symmetry, while induction of unresponsiveness involves co-selection without the breaking of diversity symmetry. The theory resolves the famous I-J paradox of the 1980s, based on co selection of helper T cells with some affinity for MHC class II and suppressor T cells that are anti-anti-MHC class II. The theory leads to three experimentally testable predictions concerning I-J. The theory includes a model for HIV pathogenesis, and suggests that polyclonal IgG from many donors given in immunogenic form may be an effective vaccine for protection against infection with HIV. Surprisingly, a mathematical model that simulates the autonomous dynamics of the system is the same as one that models a previously described neural network

Equation-Free Dynamic Renormalization: Self-Similarity in Multidimensional Particle System Dynamics

We present an equation-free dynamic renormalization approach to the computational study of coarse-grained, self-similar dynamic behavior in multidimensional particle systems. The approach is aimed at problems for which evolution equations for coarse-scale observables (e.g. particle density) are not explicitly available. Our illustrative example involves Brownian particles in a 2D Couette flow; marginal and conditional Inverse Cumulative Distribution Functions (ICDFs) constitute the macroscopic observables of the evolving particle distributions.Comment: 7 pages, 5 figure

Deformation of an elastic cell in a uniform stream and in a circulatory flow

The deformation of a circular, inextensible elastic cell is examined when the cell is placed into two different background potential flows: a uniform stream and a circulatory flow induced by a point vortex located inside the cell. In a circulatory flow a cell may deform into a mode m shape with m-fold rotational symmetry. In a uniform stream, shapes with two-fold rotational symmetry tend to be selected. In a weak stream a cell deforms linearly into an ellipse with either its major or its minor axis aligned with the oncoming flow. This marks an interesting difference with a bubble with constant surface tension in a uniform stream, which can only deform into a mode 2 shape with its major axis perpendicular to the stream (Vanden-Broeck & Keller, 1980b). In general, as the strength of the uniform stream is increased from zero, solutions emerge continuously from the cell configurations in quiescent fluid found by Flaherty et al. (1972). A richly populated solution space is described with multiple solution branches which either terminate when a cell reaches a state with a point of self-contact or loop round to continuously connect cell states which exist under identical conditions in the absence of flow