85,110 research outputs found
Detail-preserving and Content-aware Variational Multi-view Stereo Reconstruction
Accurate recovery of 3D geometrical surfaces from calibrated 2D multi-view
images is a fundamental yet active research area in computer vision. Despite
the steady progress in multi-view stereo reconstruction, most existing methods
are still limited in recovering fine-scale details and sharp features while
suppressing noises, and may fail in reconstructing regions with few textures.
To address these limitations, this paper presents a Detail-preserving and
Content-aware Variational (DCV) multi-view stereo method, which reconstructs
the 3D surface by alternating between reprojection error minimization and mesh
denoising. In reprojection error minimization, we propose a novel inter-image
similarity measure, which is effective to preserve fine-scale details of the
reconstructed surface and builds a connection between guided image filtering
and image registration. In mesh denoising, we propose a content-aware
-minimization algorithm by adaptively estimating the value and
regularization parameters based on the current input. It is much more promising
in suppressing noise while preserving sharp features than conventional
isotropic mesh smoothing. Experimental results on benchmark datasets
demonstrate that our DCV method is capable of recovering more surface details,
and obtains cleaner and more accurate reconstructions than state-of-the-art
methods. In particular, our method achieves the best results among all
published methods on the Middlebury dino ring and dino sparse ring datasets in
terms of both completeness and accuracy.Comment: 14 pages,16 figures. Submitted to IEEE Transaction on image
processin
Intersubject Regularity in the Intrinsic Shape of Human V1
Previous studies have reported considerable intersubject variability in the three-dimensional geometry of the human primary visual cortex (V1). Here we demonstrate that much of this variability is due to extrinsic geometric features of the cortical folds, and that the intrinsic shape of V1 is similar across individuals. V1 was imaged in ten ex vivo human hemispheres using high-resolution (200 μm) structural magnetic resonance imaging at high field strength (7 T). Manual tracings of the stria of Gennari were used to construct a surface representation, which was computationally flattened into the plane with minimal metric distortion. The instrinsic shape of V1 was determined from the boundary of the planar representation of the stria. An ellipse provided a simple parametric shape model that was a good approximation to the boundary of flattened V1. The aspect ration of the best-fitting ellipse was found to be consistent across subject, with a mean of 1.85 and standard deviation of 0.12. Optimal rigid alignment of size-normalized V1 produced greater overlap than that achieved by previous studies using different registration methods. A shape analysis of published macaque data indicated that the intrinsic shape of macaque V1 is also stereotyped, and similar to the human V1 shape. Previoud measurements of the functional boundary of V1 in human and macaque are in close agreement with these results
High-Order Fully General-Relativistic Hydrodynamics: new Approaches and Tests
We present a new approach for achieving high-order convergence in fully
general-relativistic hydrodynamic simulations. The approach is implemented in
WhiskyTHC, a new code that makes use of state-of-the-art numerical schemes and
was key in achieving, for the first time, higher than second-order convergence
in the calculation of the gravitational radiation from inspiraling binary
neutron stars Radice et al. (2013). Here, we give a detailed description of the
algorithms employed and present results obtained for a series of classical
tests involving isolated neutron stars. In addition, using the
gravitational-wave emission from the late inspiral and merger of binary neutron
stars, we make a detailed comparison between the results obtained with the new
code and those obtained when using standard second-order schemes commonly
employed for matter simulations in numerical relativity. We find that even at
moderate resolutions and for binaries with large compactness, the phase
accuracy is improved by a factor 50 or more.Comment: 34 pages, 16 figures. Version accepted on CQ
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Recent advances in electron microscopy have enabled the imaging of single
cells in 3D at nanometer length scale resolutions. An uncharted frontier for in
silico biology is the ability to simulate cellular processes using these
observed geometries. Enabling such simulations requires watertight meshing of
electron micrograph images into 3D volume meshes, which can then form the basis
of computer simulations of such processes using numerical techniques such as
the Finite Element Method. In this paper, we describe the use of our recently
rewritten mesh processing software, GAMer 2, to bridge the gap between poorly
conditioned meshes generated from segmented micrographs and boundary marked
tetrahedral meshes which are compatible with simulation. We demonstrate the
application of a workflow using GAMer 2 to a series of electron micrographs of
neuronal dendrite morphology explored at three different length scales and show
that the resulting meshes are suitable for finite element simulations. This
work is an important step towards making physical simulations of biological
processes in realistic geometries routine. Innovations in algorithms to
reconstruct and simulate cellular length scale phenomena based on emerging
structural data will enable realistic physical models and advance discovery at
the interface of geometry and cellular processes. We posit that a new frontier
at the intersection of computational technologies and single cell biology is
now open.Comment: 39 pages, 14 figures. High resolution figures and supplemental movies
available upon reques
3D free surface flow simulations based on the integral form of the equations of motion
This work deals with a novel three-dimensional finite-volume non-hydrostatic shock-capturing model for the simulation of wave transformation processes and wave-structure interaction. The model is based on an integral formulation of the Navier-Stokes equations solved on a coordinate system in which the vertical coordinate is varying in time. A finite-volume shock-capturing numerical technique based on high order WENO reconstructions is adopted in order to discretize the fluid motion equations
- …