Cancer diagnosis using deep learning: A bibliographic review

In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements

Disentangling Factors of Variation by Mixing Them

We propose an approach to learn image representations that consist of disentangled factors of variation without exploiting any manual labeling or data domain knowledge. A factor of variation corresponds to an image attribute that can be discerned consistently across a set of images, such as the pose or color of objects. Our disentangled representation consists of a concatenation of feature chunks, each chunk representing a factor of variation. It supports applications such as transferring attributes from one image to another, by simply mixing and unmixing feature chunks, and classification or retrieval based on one or several attributes, by considering a user-specified subset of feature chunks. We learn our representation without any labeling or knowledge of the data domain, using an autoencoder architecture with two novel training objectives: first, we propose an invariance objective to encourage that encoding of each attribute, and decoding of each chunk, are invariant to changes in other attributes and chunks, respectively; second, we include a classification objective, which ensures that each chunk corresponds to a consistently discernible attribute in the represented image, hence avoiding degenerate feature mappings where some chunks are completely ignored. We demonstrate the effectiveness of our approach on the MNIST, Sprites, and CelebA datasets.Comment: CVPR 201

Bootstrapping Deep Neural Networks from Approximate Image Processing Pipelines

Complex image processing and computer vision systems often consist of a processing pipeline of functional modules. We intend to replace parts or all of a target pipeline with deep neural networks to achieve benefits such as increased accuracy or reduced computational requirement. To acquire a large amount of labeled data necessary to train the deep neural network, we propose a workflow that leverages the target pipeline to create a significantly larger labeled training set automatically, without prior domain knowledge of the target pipeline. We show experimentally that despite the noise introduced by automated labeling and only using a very small initially labeled data set, the trained deep neural networks can achieve similar or even better performance than the components they replace, while in some cases also reducing computational requirements.Comment: 6 pages, 5 figure

Road Detection and Recognition from Monocular Images Using Neural Networks

Teede eristamine on oluline osa iseseisvatest navigatsioonisüsteemidest, mis aitavad robotitel ja autonoomsetel sõidukitel maapinnal liikuda. See on kasutusel erinevates seotud alamülesannetes, näiteks võimalike valiidsete liikumisteede leidmisel, takistusega kokkupõrke vältimisel ja teel asuvate objektide avastamisel.Selle töö eesmärk on uurida eksisteerivaid teede tuvastamise ja eristamise võtteid ning pakkuda välja alternatiivne lahendus selle teostamiseks.Töö jaoks loodi 5300-pildine andmestik ilma lisainfota teepiltidest. Lisaks tehti kokkuvõte juba eksisteerivatest teepiltide andmestikest. Töös pakume erinevates keskkondades asuvate teede piltide klassifitseerimiseks välja LeNet-5’l põhineva tehisnärvivõrgu. Samuti esitleme FCN-8’l põhinevat mudelit pikslipõhiseks pildituvastuseks.Road recognition is one of the important aspects in Autonomous Navigation Systems. These systems help to navigate the autonomous vehicle and robot on the ground. Further, road detection is useful in related sub-tasks such as finding valid road path where the robot/vehicle can go, for supportive driverless vehicles, preventing the collision with the obstacle, object detection on the road, and others.The goal of this thesis is to examine existing road detection and recognition techniques and propose an alternative solution for road classification and detection task.Our contribution consists of several parts. Firstly, we released the road images dataset with approximately 5,300 unlabeled road images. Secondly, we summarized the information about the existing road images datasets. Thirdly, we proposed the convolutional LeNet-5-based neural network for the road image classification for various environments. Finally, our FCN-8-based model for pixel-wise image recognition has been presented