651 research outputs found
Cancer diagnosis using deep learning: A bibliographic review
In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
USL-Net: Uncertainty Self-Learning Network for Unsupervised Skin Lesion Segmentation
Unsupervised skin lesion segmentation offers several benefits, including
conserving expert human resources, reducing discrepancies due to subjective
human labeling, and adapting to novel environments. However, segmenting
dermoscopic images without manual labeling guidance presents significant
challenges due to dermoscopic image artifacts such as hair noise, blister
noise, and subtle edge differences. To address these challenges, we introduce
an innovative Uncertainty Self-Learning Network (USL-Net) designed for skin
lesion segmentation. The USL-Net can effectively segment a range of lesions,
eliminating the need for manual labeling guidance. Initially, features are
extracted using contrastive learning, followed by the generation of Class
Activation Maps (CAMs) as saliency maps using these features. The different CAM
locations correspond to the importance of the lesion region based on their
saliency. High-saliency regions in the map serve as pseudo-labels for lesion
regions while low-saliency regions represent the background. However,
intermediate regions can be hard to classify, often due to their proximity to
lesion edges or interference from hair or blisters. Rather than risk potential
pseudo-labeling errors or learning confusion by forcefully classifying these
regions, we consider them as uncertainty regions, exempting them from
pseudo-labeling and allowing the network to self-learn. Further, we employ
connectivity detection and centrality detection to refine foreground
pseudo-labels and reduce noise-induced errors. The application of cycle
refining enhances performance further. Our method underwent thorough
experimental validation on the ISIC-2017, ISIC-2018, and PH2 datasets,
demonstrating that its performance is on par with weakly supervised and
supervised methods, and exceeds that of other existing unsupervised methods.Comment: 14 pages, 9 figures, 71 reference
Deep Semantic Segmentation of Natural and Medical Images: A Review
The semantic image segmentation task consists of classifying each pixel of an
image into an instance, where each instance corresponds to a class. This task
is a part of the concept of scene understanding or better explaining the global
context of an image. In the medical image analysis domain, image segmentation
can be used for image-guided interventions, radiotherapy, or improved
radiological diagnostics. In this review, we categorize the leading deep
learning-based medical and non-medical image segmentation solutions into six
main groups of deep architectural, data synthesis-based, loss function-based,
sequenced models, weakly supervised, and multi-task methods and provide a
comprehensive review of the contributions in each of these groups. Further, for
each group, we analyze each variant of these groups and discuss the limitations
of the current approaches and present potential future research directions for
semantic image segmentation.Comment: 45 pages, 16 figures. Accepted for publication in Springer Artificial
Intelligence Revie
Self-supervised Semantic Segmentation: Consistency over Transformation
Accurate medical image segmentation is of utmost importance for enabling
automated clinical decision procedures. However, prevailing supervised deep
learning approaches for medical image segmentation encounter significant
challenges due to their heavy dependence on extensive labeled training data. To
tackle this issue, we propose a novel self-supervised algorithm,
\textbf{S-Net}, which integrates a robust framework based on the proposed
Inception Large Kernel Attention (I-LKA) modules. This architectural
enhancement makes it possible to comprehensively capture contextual information
while preserving local intricacies, thereby enabling precise semantic
segmentation. Furthermore, considering that lesions in medical images often
exhibit deformations, we leverage deformable convolution as an integral
component to effectively capture and delineate lesion deformations for superior
object boundary definition. Additionally, our self-supervised strategy
emphasizes the acquisition of invariance to affine transformations, which is
commonly encountered in medical scenarios. This emphasis on robustness with
respect to geometric distortions significantly enhances the model's ability to
accurately model and handle such distortions. To enforce spatial consistency
and promote the grouping of spatially connected image pixels with similar
feature representations, we introduce a spatial consistency loss term. This
aids the network in effectively capturing the relationships among neighboring
pixels and enhancing the overall segmentation quality. The S-Net approach
iteratively learns pixel-level feature representations for image content
clustering in an end-to-end manner. Our experimental results on skin lesion and
lung organ segmentation tasks show the superior performance of our method
compared to the SOTA approaches. https://github.com/mindflow-institue/SSCTComment: Accepted in ICCV 2023 workshop CVAM
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