Reversible implementation of a disrete linear transformation

Discrete linear transformations form important steps in processing information. Many such transformations are injective and therefore are prime candidates for a physically reversible implementation into hardware. We present here the first steps towards a reversible digital implementation of two different integer transformations on four inputs: The Haar wavelet and the H.264 transform

Wavelet feature extraction and genetic algorithm for biomarker detection in colorectal cancer data

Biomarkers which predict patient’s survival can play an important role in medical diagnosis and treatment. How to select the significant biomarkers from hundreds of protein markers is a key step in survival analysis. In this paper a novel method is proposed to detect the prognostic biomarkers ofsurvival in colorectal cancer patients using wavelet analysis, genetic algorithm, and Bayes classifier. One dimensional discrete wavelet transform (DWT) is normally used to reduce the dimensionality of biomedical data. In this study one dimensional continuous wavelet transform (CWT) was proposed to extract the features of colorectal cancer data. One dimensional CWT has no ability to reduce dimensionality of data, but captures the missing features of DWT, and is complementary part of DWT. Genetic algorithm was performed on extracted wavelet coefficients to select the optimized features, using Bayes classifier to build its fitness function. The corresponding protein markers were located based on the position of optimized features. Kaplan-Meier curve and Cox regression model 2 were used to evaluate the performance of selected biomarkers. Experiments were conducted on colorectal cancer dataset and several significant biomarkers were detected. A new protein biomarker CD46 was found to significantly associate with survival time

Variational Data Assimilation via Sparse Regularization

This paper studies the role of sparse regularization in a properly chosen basis for variational data assimilation (VDA) problems. Specifically, it focuses on data assimilation of noisy and down-sampled observations while the state variable of interest exhibits sparsity in the real or transformed domain. We show that in the presence of sparsity, the $\ell_{1}$-norm regularization produces more accurate and stable solutions than the classic data assimilation methods. To motivate further developments of the proposed methodology, assimilation experiments are conducted in the wavelet and spectral domain using the linear advection-diffusion equation

Tomographic inversion using ℓ1\ell_1-norm regularization of wavelet coefficients

We propose the use of $\ell_1$ regularization in a wavelet basis for the solution of linearized seismic tomography problems $Am=d$, allowing for the possibility of sharp discontinuities superimposed on a smoothly varying background. An iterative method is used to find a sparse solution $m$ that contains no more fine-scale structure than is necessary to fit the data $d$ to within its assigned errors.Comment: 19 pages, 14 figures. Submitted to GJI July 2006. This preprint does not use GJI style files (which gives wrong received/accepted dates). Corrected typ

A Multiscale Guide to Brownian Motion

We revise the Levy's construction of Brownian motion as a simple though still rigorous approach to operate with various Gaussian processes. A Brownian path is explicitly constructed as a linear combination of wavelet-based "geometrical features" at multiple length scales with random weights. Such a wavelet representation gives a closed formula mapping of the unit interval onto the functional space of Brownian paths. This formula elucidates many classical results about Brownian motion (e.g., non-differentiability of its path), providing intuitive feeling for non-mathematicians. The illustrative character of the wavelet representation, along with the simple structure of the underlying probability space, is different from the usual presentation of most classical textbooks. Similar concepts are discussed for fractional Brownian motion, Ornstein-Uhlenbeck process, Gaussian free field, and fractional Gaussian fields. Wavelet representations and dyadic decompositions form the basis of many highly efficient numerical methods to simulate Gaussian processes and fields, including Brownian motion and other diffusive processes in confining domains

Convex and Network Flow Optimization for Structured Sparsity

We consider a class of learning problems regularized by a structured sparsity-inducing norm defined as the sum of l_2- or l_infinity-norms over groups of variables. Whereas much effort has been put in developing fast optimization techniques when the groups are disjoint or embedded in a hierarchy, we address here the case of general overlapping groups. To this end, we present two different strategies: On the one hand, we show that the proximal operator associated with a sum of l_infinity-norms can be computed exactly in polynomial time by solving a quadratic min-cost flow problem, allowing the use of accelerated proximal gradient methods. On the other hand, we use proximal splitting techniques, and address an equivalent formulation with non-overlapping groups, but in higher dimension and with additional constraints. We propose efficient and scalable algorithms exploiting these two strategies, which are significantly faster than alternative approaches. We illustrate these methods with several problems such as CUR matrix factorization, multi-task learning of tree-structured dictionaries, background subtraction in video sequences, image denoising with wavelets, and topographic dictionary learning of natural image patches.Comment: to appear in the Journal of Machine Learning Research (JMLR

Generalized Inpainting Method for Hyperspectral Image Acquisition

A recently designed hyperspectral imaging device enables multiplexed acquisition of an entire data volume in a single snapshot thanks to monolithically-integrated spectral filters. Such an agile imaging technique comes at the cost of a reduced spatial resolution and the need for a demosaicing procedure on its interleaved data. In this work, we address both issues and propose an approach inspired by recent developments in compressed sensing and analysis sparse models. We formulate our superresolution and demosaicing task as a 3-D generalized inpainting problem. Interestingly, the target spatial resolution can be adjusted for mitigating the compression level of our sensing. The reconstruction procedure uses a fast greedy method called Pseudo-inverse IHT. We also show on simulations that a random arrangement of the spectral filters on the sensor is preferable to regular mosaic layout as it improves the quality of the reconstruction. The efficiency of our technique is demonstrated through numerical experiments on both synthetic and real data as acquired by the snapshot imager.Comment: Keywords: Hyperspectral, inpainting, iterative hard thresholding, sparse models, CMOS, Fabry-P\'ero