8,084 research outputs found
Learning Deep Similarity Metric for 3D MR-TRUS Registration
Purpose: The fusion of transrectal ultrasound (TRUS) and magnetic resonance
(MR) images for guiding targeted prostate biopsy has significantly improved the
biopsy yield of aggressive cancers. A key component of MR-TRUS fusion is image
registration. However, it is very challenging to obtain a robust automatic
MR-TRUS registration due to the large appearance difference between the two
imaging modalities. The work presented in this paper aims to tackle this
problem by addressing two challenges: (i) the definition of a suitable
similarity metric and (ii) the determination of a suitable optimization
strategy.
Methods: This work proposes the use of a deep convolutional neural network to
learn a similarity metric for MR-TRUS registration. We also use a composite
optimization strategy that explores the solution space in order to search for a
suitable initialization for the second-order optimization of the learned
metric. Further, a multi-pass approach is used in order to smooth the metric
for optimization.
Results: The learned similarity metric outperforms the classical mutual
information and also the state-of-the-art MIND feature based methods. The
results indicate that the overall registration framework has a large capture
range. The proposed deep similarity metric based approach obtained a mean TRE
of 3.86mm (with an initial TRE of 16mm) for this challenging problem.
Conclusion: A similarity metric that is learned using a deep neural network
can be used to assess the quality of any given image registration and can be
used in conjunction with the aforementioned optimization framework to perform
automatic registration that is robust to poor initialization.Comment: To appear on IJCAR
Piecewise rigid curve deformation via a Finsler steepest descent
This paper introduces a novel steepest descent flow in Banach spaces. This
extends previous works on generalized gradient descent, notably the work of
Charpiat et al., to the setting of Finsler metrics. Such a generalized gradient
allows one to take into account a prior on deformations (e.g., piecewise rigid)
in order to favor some specific evolutions. We define a Finsler gradient
descent method to minimize a functional defined on a Banach space and we prove
a convergence theorem for such a method. In particular, we show that the use of
non-Hilbertian norms on Banach spaces is useful to study non-convex
optimization problems where the geometry of the space might play a crucial role
to avoid poor local minima. We show some applications to the curve matching
problem. In particular, we characterize piecewise rigid deformations on the
space of curves and we study several models to perform piecewise rigid
evolution of curves
A relaxed approach for curve matching with elastic metrics
In this paper we study a class of Riemannian metrics on the space of
unparametrized curves and develop a method to compute geodesics with given
boundary conditions. It extends previous works on this topic in several
important ways. The model and resulting matching algorithm integrate within one
common setting both the family of -metrics with constant coefficients and
scale-invariant -metrics on both open and closed immersed curves. These
families include as particular cases the class of first-order elastic metrics.
An essential difference with prior approaches is the way that boundary
constraints are dealt with. By leveraging varifold-based similarity metrics we
propose a relaxed variational formulation for the matching problem that avoids
the necessity of optimizing over the reparametrization group. Furthermore, we
show that we can also quotient out finite-dimensional similarity groups such as
translation, rotation and scaling groups. The different properties and
advantages are illustrated through numerical examples in which we also provide
a comparison with related diffeomorphic methods used in shape registration.Comment: 27 page
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