Identifying Solar Flare Precursors Using Time Series of SDO/HMI Images and SHARP Parameters

We present several methods towards construction of precursors, which show great promise towards early predictions, of solar flare events in this paper. A data pre-processing pipeline is built to extract useful data from multiple sources, Geostationary Operational Environmental Satellites (GOES) and Solar Dynamics Observatory (SDO)/Helioseismic and Magnetic Imager (HMI), to prepare inputs for machine learning algorithms. Two classification models are presented: classification of flares from quiet times for active regions and classification of strong versus weak flare events. We adopt deep learning algorithms to capture both the spatial and temporal information from HMI magnetogram data. Effective feature extraction and feature selection with raw magnetogram data using deep learning and statistical algorithms enable us to train classification models to achieve almost as good performance as using active region parameters provided in HMI/Space-Weather HMI-Active Region Patch (SHARP) data files. Case studies show a significant increase in the prediction score around 20 hours before strong solar flare events

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

Empirical evidence suggests that the malaria parasite Plasmodium falciparum employs a broad range of mechanisms to regulate gene transcription throughout the organism's complex life cycle. To better understand this regulatory machinery, we assembled a rich collection of genomic and epigenomic data sets, including information about transcription factor (TF) binding motifs, patterns of covalent histone modifications, nucleosome occupancy, GC content, and global 3D genome architecture. We used these data to train machine learning models to discriminate between high-expression and low-expression genes, focusing on three distinct stages of the red blood cell phase of the Plasmodium life cycle. Our results highlight the importance of histone modifications and 3D chromatin architecture in Plasmodium transcriptional regulation and suggest that AP2 transcription factors may play a limited regulatory role, perhaps operating in conjunction with epigenetic factors

An MRI-Derived Definition of MCI-to-AD Conversion for Long-Term, Automati c Prognosis of MCI Patients

Alzheimer's disease (AD) and mild cognitive impairment (MCI), continue to be widely studied. While there is no consensus on whether MCIs actually "convert" to AD, the more important question is not whether MCIs convert, but what is the best such definition. We focus on automatic prognostication, nominally using only a baseline image brain scan, of whether an MCI individual will convert to AD within a multi-year period following the initial clinical visit. This is in fact not a traditional supervised learning problem since, in ADNI, there are no definitive labeled examples of MCI conversion. Prior works have defined MCI subclasses based on whether or not clinical/cognitive scores such as CDR significantly change from baseline. There are concerns with these definitions, however, since e.g. most MCIs (and ADs) do not change from a baseline CDR=0.5, even while physiological changes may be occurring. These works ignore rich phenotypical information in an MCI patient's brain scan and labeled AD and Control examples, in defining conversion. We propose an innovative conversion definition, wherein an MCI patient is declared to be a converter if any of the patient's brain scans (at follow-up visits) are classified "AD" by an (accurately-designed) Control-AD classifier. This novel definition bootstraps the design of a second classifier, specifically trained to predict whether or not MCIs will convert. This second classifier thus predicts whether an AD-Control classifier will predict that a patient has AD. Our results demonstrate this new definition leads not only to much higher prognostic accuracy than by-CDR conversion, but also to subpopulations much more consistent with known AD brain region biomarkers. We also identify key prognostic region biomarkers, essential for accurately discriminating the converter and nonconverter groups

Non-uniform Feature Sampling for Decision Tree Ensembles

We study the effectiveness of non-uniform randomized feature selection in decision tree classification. We experimentally evaluate two feature selection methodologies, based on information extracted from the provided dataset: $(i)$ \emph{leverage scores-based} and $(ii)$ \emph{norm-based} feature selection. Experimental evaluation of the proposed feature selection techniques indicate that such approaches might be more effective compared to naive uniform feature selection and moreover having comparable performance to the random forest algorithm [3]Comment: 7 pages, 7 figures, 1 tabl

Radar-based Feature Design and Multiclass Classification for Road User Recognition

The classification of individual traffic participants is a complex task, especially for challenging scenarios with multiple road users or under bad weather conditions. Radar sensors provide an - with respect to well established camera systems - orthogonal way of measuring such scenes. In order to gain accurate classification results, 50 different features are extracted from the measurement data and tested on their performance. From these features a suitable subset is chosen and passed to random forest and long short-term memory (LSTM) classifiers to obtain class predictions for the radar input. Moreover, it is shown why data imbalance is an inherent problem in automotive radar classification when the dataset is not sufficiently large. To overcome this issue, classifier binarization is used among other techniques in order to better account for underrepresented classes. A new method to couple the resulting probabilities is proposed and compared to others with great success. Final results show substantial improvements when compared to ordinary multiclass classificationComment: 8 pages, 6 figure

Automation of motor dexterity assessment

Motor dexterity assessment is regularly performed in rehabilitation wards to establish patient status and automatization for such routinary task is sought. A system for automatizing the assessment of motor dexterity based on the Fugl-Meyer scale and with loose restrictions on sensing technologies is presented. The system consists of two main elements: 1) A data representation that abstracts the low level information obtained from a variety of sensors, into a highly separable low dimensionality encoding employing t-distributed Stochastic Neighbourhood Embedding, and, 2) central to this communication, a multi-label classifier that boosts classification rates by exploiting the fact that the classes corresponding to the individual exercises are naturally organized as a network. Depending on the targeted therapeutic movement class labels i.e. exercises scores, are highly correlated-patients who perform well in one, tends to perform well in related exercises-; and critically no node can be used as proxy of others - an exercise does not encode the information of other exercises. Over data from a cohort of 20 patients, the novel classifier outperforms classical Naive Bayes, random forest and variants of support vector machines (ANOVA: p <; 0.001). The novel multi-label classification strategy fulfills an automatic system for motor dexterity assessment, with implications for lessening therapist's workloads, reducing healthcare costs and providing support for home-based virtual rehabilitation and telerehabilitation alternatives