Quantum Genetics and Quantum Automata Models of Quantum-Molecular Evolution Involved in the Evolution of Organisms and Species

Previous theoretical or general approaches to the problems of Quantum Genetics and Molecular Evolution are considered in this article from the point of view of Quantum Automata Theory first published by the author in 1971 and further developed in several recent articles. The representation of genomes and Interactome networks in categories of many-valued logic LMn –algebras that are naturally transformed during biological evolution, or evolve through interactions with the environment provide a new insight into the mechanisms of molecular evolution, as well as organismal evolution, in terms of sequences of quantum automata. Phenotypic changes are expressed only when certain environmentally-induced quantum-molecular changes are coupled with an internal re-structuring of major submodules of the genome and Interactome networks related to cell cycling and cell growth. Contrary to the commonly held view of `standard’ Darwinist models of evolution, the evolution of organisms and species occurs through coupled multi-molecular transformations induced not only by the environment but actually realized through internal re-organizations of genome and interactome networks. The biological, evolutionary processes involve certain epigenetic transformations that are responsible for phenotypic expression of the genome and Interactome transformations initiated at the quantum-molecular level. It can thus be said that only quantum genetics can provide correct explanations of evolutionary processes that are initiated at the quantum--multi-molecular levels and propagate to the higher levels of organismal and species evolution.

Biological evolution should be therefore regarded as a multi-scale process which is initiated by underlying quantum (coupled) multi-molecular transformations of the genomic and interactomic networks, followed by specific phenotypic transformations at the level of organism and the variable biogroupoids associated with the evolution of species which are essential to the survival of the species. The theoretical framework introduced in this article also paves the way to a Quantitative Biology approach to biological evolution at the quantum-molecular, as well as at the organismal and species levels. This is quite a substantial modification of the 'established’ modern Darwinist, and also of several so-called `molecular evolution’ theories

Multivalued Logic, Neutrosophy and Schrodinger equation

This book was intended to discuss some paradoxes in Quantum Mechanics from the viewpoint of Multi-Valued-logic pioneered by Lukasiewicz, and a recent concept Neutrosophic Logic. Essentially, this new concept offers new insights on the idea of ‘identity’, which too often it has been accepted as given. Neutrosophy itself was developed in attempt to generalize Fuzzy-Logic introduced by L. Zadeh. While some aspects of theoretical foundations of logic are discussed, this book is not intended solely for pure mathematicians, but instead for physicists in the hope that some of ideas presented herein will be found useful. The book is motivated by observation that despite almost eight decades, there is indication that some of those paradoxes known in Quantum Physics are not yet solved. In our knowledge, this is because the solution of those paradoxes requires re-examination of the foundations of logic itself, in particular on the notion of identity and multi-valuedness of entity. The book is also intended for young physicist fellows who think that somewhere there should be a ‘complete’ explanation of these paradoxes in Quantum Mechanics. If this book doesn’t answer all of their questions, it is our hope that at least it offers a new alternative viewpoint for these old questions

Quantum objects are vague objects

[FIRST PARAGRAPHS] Is vagueness a feature of the world or merely of our representations of the world? Of course, one might respond to this question by asserting that insofar as our knowledge of the world is mediated by our representations of it, any attribution of vagueness must attach to the latter. However, this is to trivialize the issue: even granted the point that all knowledge is representational, the question can be re-posed by asking whether vague features of our representations are ultimately eliminable or not. It is the answer to this question which distinguishes those who believe that vagueness is essentially epistemic from those who believe that it is, equally essentially, ontic. The eliminability of vague features according to the epistemic view can be expressed in terms of the supervenience of ‘vaguely described facts’ on ‘precisely describable facts’: If two possible situations are alike as precisely described in terms of physical measurements, for example, then they are alike as vaguely described with words like ‘thin’. It may therefore be concluded that the facts themselves are not vague, for all the facts supervene on precisely describable facts. (Williamson 1994, p. 248; see also pp. 201- 204) It is the putative vagueness of certain identity statements in particular that has been the central focus of claims that there is vagueness ‘in’ the world (Parfit 1984, pp. 238-241; Kripke 1972, p. 345 n. 18). Thus, it may be vague as to who is identical to whom after a brain-swap, to give a much discussed example. Such claims have been dealt a forceful blow by the famous Evans-Salmon argument which runs as follows: suppose for reductio that it is indeterminate whether a = b. Then b definitely possesses the property that it is indeterminate whether it is identical with a, but a definitely does not possess this property since it is surely not indeterminate whether a=a. Therefore, by Leibniz’s Law, it cannot be the case that a=b and so the identity cannot be indeterminate (Evans 1978; Salmon 1982)

Classical limit and quantum logic

The more common scheme to explain the classical limit of quantum mechanics includes decoherence, which removes from the state the interference terms classically inadmissible since embodying non-Booleanity. In this work we consider the classical limit from a logical viewpoint, as a quantum-to-Boolean transition. The aim is to open the door to a new study based on dynamical logics, that is, logics that change over time. In particular, we appeal to the notion of hybrid logics to describe semiclassical systems. Moreover, we consider systems with many characteristic decoherence times, whose sublattices of properties become distributive at different times

Making Sense of Non-Individuals in Quantum Mechanics

In this work, we focus on a very specific case study: assuming that quantum theories deal with “particles” of some kind (point particles in orthodox non-relativistic quantum mechanics, field excitations in quantum field theories), what kind of entity can such particles be? One possible answer, the one we shall examine here, is that they are not the usual kind of object found in daily life: individuals. Rather, we follow a suggestion by Erwin Schrödinger, according to which quantum mechanics poses a revolutionary kind of entity: non-individuals. While physics, as a scientific field, is not concerned with whether entities posited by a specific physical theory are individuals or not, answering this question is part of the quest for a better understanding of physical reality. Here lies, in large measure, the relevance of ontology

Making Sense of Non-Individuals in Quantum Mechanics

In this work, we focus on a very specific case study: assuming that quantum theories deal with “particles” of some kind (point particles in orthodox non-relativistic quantum mechanics, field excitations in quantum field theories), what kind of entity can such particles be? One possible answer, the one we shall examine here, is that they are not the usual kind of object found in daily life: individuals. Rather, we follow a suggestion by Erwin Schrödinger, according to which quantum mechanics poses a revolutionary kind of entity: non-individuals. While physics, as a scientific field, is not concerned with whether entities posited by a specific physical theory are individuals or not, answering this question is part of the quest for a better understanding of physical reality. Here lies, in large measure, the relevance of ontology

From Simple to Complex and Ultra-complex Systems:\ud A Paradigm Shift Towards Non-Abelian Systems Dynamics

Atoms, molecules, organisms distinguish layers of reality because of the causal links that govern their behavior, both horizontally (atom-atom, molecule-molecule, organism-organism) and vertically (atom-molecule-organism). This is the first intuition of the theory of levels. Even if the further development of the theory will require imposing a number of qualifications to this initial intuition, the idea of a series of entities organized on different levels of complexity will prove correct. Living systems as well as social systems and the human mind present features remarkably different from those characterizing non-living, simple physical and chemical systems. We propose that super-complexity requires at least four different categorical frameworks, provided by the theories of levels of reality, chronotopoids, (generalized) interactions, and anticipation