Local Binary Pattern based algorithms for the discrimination and detection of crops and weeds with similar morphologies

In cultivated agricultural fields, weeds are unwanted species that compete with the crop plants for nutrients, water, sunlight and soil, thus constraining their growth. Applying new real-time weed detection and spraying technologies to agriculture would enhance current farming practices, leading to higher crop yields and lower production costs. Various weed detection methods have been developed for Site-Specific Weed Management (SSWM) aimed at maximising the crop yield through efficient control of weeds. Blanket application of herbicide chemicals is currently the most popular weed eradication practice in weed management and weed invasion. However, the excessive use of herbicides has a detrimental impact on the human health, economy and environment. Before weeds are resistant to herbicides and respond better to weed control strategies, it is necessary to control them in the fallow, pre-sowing, early post-emergent and in pasture phases. Moreover, the development of herbicide resistance in weeds is the driving force for inventing precision and automation weed treatments. Various weed detection techniques have been developed to identify weed species in crop fields, aimed at improving the crop quality, reducing herbicide and water usage and minimising environmental impacts. In this thesis, Local Binary Pattern (LBP)-based algorithms are developed and tested experimentally, which are based on extracting dominant plant features from camera images to precisely detecting weeds from crops in real time. Based on the efficient computation and robustness of the first LBP method, an improved LBP-based method is developed based on using three different LBP operators for plant feature extraction in conjunction with a Support Vector Machine (SVM) method for multiclass plant classification. A 24,000-image dataset, collected using a testing facility under simulated field conditions (Testbed system), is used for algorithm training, validation and testing. The dataset, which is published online under the name “bccr-segset”, consists of four subclasses: background, Canola (Brassica napus), Corn (Zea mays), and Wild radish (Raphanus raphanistrum). In addition, the dataset comprises plant images collected at four crop growth stages, for each subclass. The computer-controlled Testbed is designed to rapidly label plant images and generate the “bccr-segset” dataset. Experimental results show that the classification accuracy of the improved LBP-based algorithm is 91.85%, for the four classes. Due to the similarity of the morphologies of the canola (crop) and wild radish (weed) leaves, the conventional LBP-based method has limited ability to discriminate broadleaf crops from weeds. To overcome this limitation and complex field conditions (illumination variation, poses, viewpoints, and occlusions), a novel LBP-based method (denoted k-FLBPCM) is developed to enhance the classification accuracy of crops and weeds with similar morphologies. Our contributions include (i) the use of opening and closing morphological operators in pre-processing of plant images, (ii) the development of the k-FLBPCM method by combining two methods, namely, the filtered local binary pattern (LBP) method and the contour-based masking method with a coefficient k, and (iii) the optimal use of SVM with the radial basis function (RBF) kernel to precisely identify broadleaf plants based on their distinctive features. The high performance of this k-FLBPCM method is demonstrated by experimentally attaining up to 98.63% classification accuracy at four different growth stages for all classes of the “bccr-segset” dataset. To evaluate performance of the k-FLBPCM algorithm in real-time, a comparison analysis between our novel method (k-FLBPCM) and deep convolutional neural networks (DCNNs) is conducted on morphologically similar crops and weeds. Various DCNN models, namely VGG-16, VGG-19, ResNet50 and InceptionV3, are optimised, by fine-tuning their hyper-parameters, and tested. Based on the experimental results on the “bccr-segset” dataset collected from the laboratory and the “fieldtrip_can_weeds” dataset collected from the field under practical environments, the classification accuracies of the DCNN models and the k-FLBPCM method are almost similar. Another experiment is conducted by training the algorithms with plant images obtained at mature stages and testing them at early stages. In this case, the new k-FLBPCM method outperformed the state-of-the-art CNN models in identifying small leaf shapes of canola-radish (crop-weed) at early growth stages, with an order of magnitude lower error rates in comparison with DCNN models. Furthermore, the execution time of the k-FLBPCM method during the training and test phases was faster than the DCNN counterparts, with an identification time difference of approximately 0.224ms per image for the laboratory dataset and 0.346ms per image for the field dataset. These results demonstrate the ability of the k-FLBPCM method to rapidly detect weeds from crops of similar appearance in real time with less data, and generalize to different size plants better than the CNN-based methods

Plant image retrieval using color, shape and texture features

We present a content-based image retrieval system for plant image retrieval, intended especially for the house plant identification problem. A plant image consists of a collection of overlapping leaves and possibly flowers, which makes the problem challenging.We studied the suitability of various well-known color, shape and texture features for this problem, as well as introducing some new texture matching techniques and shape features. Feature extraction is applied after segmenting the plant region from the background using the max-flow min-cut technique. Results on a database of 380 plant images belonging to 78 different types of plants show promise of the proposed new techniques and the overall system: in 55% of the queries, the correct plant image is retrieved among the top-15 results. Furthermore, the accuracy goes up to 73% when a 132-image subset of well-segmented plant images are considered

Effective plant discrimination based on the combination of local binary pattern operators and multiclass support vector machine methods

Accurate crop and weed discrimination plays a critical role in addressing the challenges of weed management in agriculture. The use of herbicides is currently the most common approach to weed control. However, herbicide resistant plants have long been recognised as a major concern due to the excessive use of herbicides. Effective weed detection techniques can reduce the cost of weed management and improve crop quality and yield. A computationally efficient and robust plant classification algorithm is developed and applied to the classification of three crops: Brassica napus (canola), Zea mays (maize/corn), and radish. The developed algorithm is based on the combination of Local Binary Pattern (LBP) operators, for the extraction of crop leaf textural features and Support vector machine (SVM) method, for multiclass plant classification. This paper presents the first investigation of the accuracy of the combined LBP algorithms, trained using a large dataset of canola, radish and barley leaf images captured by a testing facility under simulated field conditions. The dataset has four subclasses, background, canola, corn, and radish, with 24,000 images used for training and 6000 images, for validation. The dataset is referred herein as “bccr-segset” and published online. In each subclass, plant images are collected at four crop growth stages. Experimentally, the algorithm demonstrates plant classification accuracy as high as 91.85%, for the four classes. © 2018 China Agricultural Universit

Comparative Analysis of Techniques Used to Detect Copy-Move Tampering for Real-World Electronic Images

Evolution of high computational powerful computers, easy availability of several innovative editing software package and high-definition quality-based image capturing tools follows to effortless result in producing image forgery. Though, threats for security and misinterpretation of digital images and scenes have been observed to be happened since a long period and also a lot of research has been established in developing diverse techniques to authenticate the digital images. On the contrary, the research in this region is not limited to checking the validity of digital photos but also to exploring the specific signs of distortion or forgery. This analysis would not require additional prior information of intrinsic content of corresponding digital image or prior embedding of watermarks. In this paper, recent growth in the area of digital image tampering identification have been discussed along with benchmarking study has been shown with qualitative and quantitative results. With variety of methodologies and concepts, different applications of forgery detection have been discussed with corresponding outcomes especially using machine and deep learning methods in order to develop efficient automated forgery detection system. The future applications and development of advanced soft-computing based techniques in digital image forgery tampering has been discussed

Comparative Analysis of Techniques Used to Detect Copy-Move Tampering for Real-World Electronic Images

Evolution of high computational powerful computers, easy availability of several innovative editing software package and high-definition quality-based image capturing tools follows to effortless result in producing image forgery. Though, threats for security and misinterpretation of digital images and scenes have been observed to be happened since a long period and also a lot of research has been established in developing diverse techniques to authenticate the digital images. On the contrary, the research in this region is not limited to checking the validity of digital photos but also to exploring the specific signs of distortion or forgery. This analysis would not require additional prior information of intrinsic content of corresponding digital image or prior embedding of watermarks. In this paper, recent growth in the area of digital image tampering identification have been discussed along with benchmarking study has been shown with qualitative and quantitative results. With variety of methodologies and concepts, different applications of forgery detection have been discussed with corresponding outcomes especially using machine and deep learning methods in order to develop efficient automated forgery detection system. The future applications and development of advanced soft-computing based techniques in digital image forgery tampering has been discussed

A comprehensive review of fruit and vegetable classification techniques

Recent advancements in computer vision have enabled wide-ranging applications in every field of life. One such application area is fresh produce classification, but the classification of fruit and vegetable has proven to be a complex problem and needs to be further developed. Fruit and vegetable classification presents significant challenges due to interclass similarities and irregular intraclass characteristics. Selection of appropriate data acquisition sensors and feature representation approach is also crucial due to the huge diversity of the field. Fruit and vegetable classification methods have been developed for quality assessment and robotic harvesting but the current state-of-the-art has been developed for limited classes and small datasets. The problem is of a multi-dimensional nature and offers significantly hyperdimensional features, which is one of the major challenges with current machine learning approaches. Substantial research has been conducted for the design and analysis of classifiers for hyperdimensional features which require significant computational power to optimise with such features. In recent years numerous machine learning techniques for example, Support Vector Machine (SVM), K-Nearest Neighbour (KNN), Decision Trees, Artificial Neural Networks (ANN) and Convolutional Neural Networks (CNN) have been exploited with many different feature description methods for fruit and vegetable classification in many real-life applications. This paper presents a critical comparison of different state-of-the-art computer vision methods proposed by researchers for classifying fruit and vegetable

Plant Identification from Leaves using Pattern Recognition Techniques

Medicinal plants have been used throughout the human history. Ayurveda is one of the oldest medicine system, which is even recognized in the modern medical society, uses plants for the preparation of medicines. There are thousands of species of plants used in the preparation of medicines. The difficulty lies in the identification of plant species. An individual with deep knowledge of plants can only differentiate between these species. This makes leaf identification very difficult. A reference guide to plants identification may ease up the problems. This is where nature needs engineering. In this work, a system is being developed which helps in the identification of the plants based on the leaf. This system takes input as a leaf image and outputs the name of the species and other relevant details which are stored in the database. The system is designed using the technique of image identification using pattern recognition. The approach of shape and texture identification, both are combined for designing such a system. The segmentation of the images was done using the techniques of graph-cuts. The descriptor used for shape identification was Shape Context and textures were described using Local Binary Patterns. The classification was done using feed forward Multi-Layered Perceptron (MLP) neural network with backpropagation training algorithm. The system was tested of certain class of leaves and the performance of the system is compared with an existing system

Leaf recognition for accurate plant classification.

Doctor of Philosophy in Computer Science, University of KwaZulu-Natal, Durban 2017.Plants are the most important living organisms on our planet because they are sources of energy and protect our planet against global warming. Botanists were the first scientist to design techniques for plant species recognition using leaves. Although many techniques for plant recognition using leaf images have been proposed in the literature, the precision and the quality of feature descriptors for shape, texture, and color remain the major challenges. This thesis investigates the precision of geometric shape features extraction and improved the determination of the Minimum Bounding Rectangle (MBR). The comparison of the proposed improved MBR determination method to Chaudhuri's method is performed using Mean Absolute Error (MAE) generated by each method on each edge point of the MBR. On the top left point of the determined MBR, Chaudhuri's method has the MAE value of 26.37 and the proposed method has the MAE value of 8.14. This thesis also investigates the use of the Convexity Measure of Polygons for the characterization of the degree of convexity of a given leaf shape. Promising results are obtained when using the Convexity Measure of Polygons combined with other geometric features to characterize leave images, and a classification rate of 92% was obtained with a Multilayer Perceptron Neural Network classifier. After observing the limitations of the Convexity Measure of Polygons, a new shape feature called Convexity Moments of Polygons is presented in this thesis. This new feature has the invariant properties of the Convexity Measure of Polygons, but is more precise because it uses more than one value to characterize the degree of convexity of a given shape. Promising results are obtained when using the Convexity Moments of Polygons combined with other geometric features to characterize the leaf images and a classification rate of 95% was obtained with the Multilayer Perceptron Neural Network classifier. Leaf boundaries carry valuable information that can be used to distinguish between plant species. In this thesis, a new boundary-based shape characterization method called Sinuosity Coefficients is proposed. This method has been used in many fields of science like Geography to describe rivers meandering. The Sinuosity Coefficients is scale and translation invariant. Promising results are obtained when using Sinuosity Coefficients combined with other geometric features to characterize the leaf images, a classification rate of 80% was obtained with the Multilayer Perceptron Neural Network classifier. Finally, this thesis implements a model for plant classification using leaf images, where an input leaf image is described using the Convexity Moments, the Sinuosity Coefficients and the geometric features to generate a feature vector for the recognition of plant species using a Radial Basis Neural Network. With the model designed and implemented the overall classification rate of 97% was obtained

Content based image retrieval for identification of plants using color, texture and shape features

In this thesis, an application of content-based image retrieval is proposed for plant identification, along with a preliminary implementation. The system takes a plant image as input and finds the matching plant from a plant image database and is intended to provide users a simple method to locate information about their plants. With a larger database, the system might be used by biologists, as an easy way to access to plant databases. Max-flow min-cut technique is used as the image segmentation method to separate the plant from the background of the image, so as to extract the general structure of the plant. Various color, texture and shape features extracted from the segmented plant region are used in matching images to the database. Color and texture analysis are based on commonly used features, namely color histograms in different color spaces, color co-occurrence matrices and Gabor texture maps. As for shape, we introduce some new descriptors to capture the outer contour characteristics of a plant. While color is very useful in many CBIR problems, in this particular problem, it introduces some challenges as well, since many plants just differ in the particular hue of the green color. As for shape and texture analysis, the difficulty stems from the fact that the plant is composed of many leaves, resulting in a complex and variable outer contour and texture. For texture analysis, we tried to capture leaf-level information using smaller shape regions or patches. Patch size is designed to contain a leaf structure approximately. Results show that for 54% of the queries, the correct plant image is retrieved among the top-15 results, using our database of 380 plants from 78 different plant types. Moreover, the tests are also performed on a clean database in which all the plant images have smooth shape descriptors and are among the 380 images. The test results obtained using this clean database increased the top-15 retrieval probability to 68%

Computing Interpretable Representations of Cell Morphodynamics

Shape changes (morphodynamics) are one of the principal ways cells interact with their environments and perform key intrinsic behaviours like division. These dynamics arise from a myriad of complex signalling pathways that often organise with emergent simplicity to carry out critical functions including predation, collaboration and migration. A powerful method for analysis can therefore be to quantify this emergent structure, bypassing the low-level complexity. Enormous image datasets are now available to mine. However, it can be difficult to uncover interpretable representations of the global organisation of these heterogeneous dynamic processes. Here, such representations were developed for interpreting morphodynamics in two key areas: mode of action (MoA) comparison for drug discovery (developed using the economically devastating Asian soybean rust crop pathogen) and 3D migration of immune system T cells through extracellular matrices (ECMs). For MoA comparison, population development over a 2D space of shapes (morphospace) was described using two models with condition-dependent parameters: a top-down model of diffusive development over Waddington-type landscapes, and a bottom-up model of tip growth. A variety of landscapes were discovered, describing phenotype transitions during growth, and possible perturbations in the tip growth machinery that cause this variation were identified. For interpreting T cell migration, a new 3D shape descriptor that incorporates key polarisation information was developed, revealing low-dimensionality of shape, and the distinct morphodynamics of run-and-stop modes that emerge at minute timescales were mapped. Periodically oscillating morphodynamics that include retrograde deformation flows were found to underlie active translocation (run mode). Overall, it was found that highly interpretable representations could be uncovered while still leveraging the enormous discovery power of deep learning algorithms. The results show that whole-cell morphodynamics can be a convenient and powerful place to search for structure, with potentially life-saving applications in medicine and biocide discovery as well as immunotherapeutics.Open Acces