Empowering parallel computing with field programmable gate arrays

After more than 30 years, reconfigurable computing has grown from a concept to a mature field of science and technology. The cornerstone of this evolution is the field programmable gate array, a building block enabling the configuration of a custom hardware architecture. The departure from static von Neumannlike architectures opens the way to eliminate the instruction overhead and to optimize the execution speed and power consumption. FPGAs now live in a growing ecosystem of development tools, enabling software programmers to map algorithms directly onto hardware. Applications abound in many directions, including data centers, IoT, AI, image processing and space exploration. The increasing success of FPGAs is largely due to an improved toolchain with solid high-level synthesis support as well as a better integration with processor and memory systems. On the other hand, long compile times and complex design exploration remain areas for improvement. In this paper we address the evolution of FPGAs towards advanced multi-functional accelerators, discuss different programming models and their HLS language implementations, as well as high-performance tuning of FPGAs integrated into a heterogeneous platform. We pinpoint fallacies and pitfalls, and identify opportunities for language enhancements and architectural refinements

Tortoise: Interactive System Configuration Repair

System configuration languages provide powerful abstractions that simplify managing large-scale, networked systems. Thousands of organizations now use configuration languages, such as Puppet. However, specifications written in configuration languages can have bugs and the shell remains the simplest way to debug a misconfigured system. Unfortunately, it is unsafe to use the shell to fix problems when a system configuration language is in use: a fix applied from the shell may cause the system to drift from the state specified by the configuration language. Thus, despite their advantages, configuration languages force system administrators to give up the simplicity and familiarity of the shell. This paper presents a synthesis-based technique that allows administrators to use configuration languages and the shell in harmony. Administrators can fix errors using the shell and the technique automatically repairs the higher-level specification written in the configuration language. The approach (1) produces repairs that are consistent with the fix made using the shell; (2) produces repairs that are maintainable by minimizing edits made to the original specification; (3) ranks and presents multiple repairs when relevant; and (4) supports all shells the administrator may wish to use. We implement our technique for Puppet, a widely used system configuration language, and evaluate it on a suite of benchmarks under 42 repair scenarios. The top-ranked repair is selected by humans 76% of the time and the human-equivalent repair is ranked 1.31 on average.Comment: Published version in proceedings of IEEE/ACM International Conference on Automated Software Engineering (ASE) 201

Overfitting in Synthesis: Theory and Practice (Extended Version)

In syntax-guided synthesis (SyGuS), a synthesizer's goal is to automatically generate a program belonging to a grammar of possible implementations that meets a logical specification. We investigate a common limitation across state-of-the-art SyGuS tools that perform counterexample-guided inductive synthesis (CEGIS). We empirically observe that as the expressiveness of the provided grammar increases, the performance of these tools degrades significantly. We claim that this degradation is not only due to a larger search space, but also due to overfitting. We formally define this phenomenon and prove no-free-lunch theorems for SyGuS, which reveal a fundamental tradeoff between synthesizer performance and grammar expressiveness. A standard approach to mitigate overfitting in machine learning is to run multiple learners with varying expressiveness in parallel. We demonstrate that this insight can immediately benefit existing SyGuS tools. We also propose a novel single-threaded technique called hybrid enumeration that interleaves different grammars and outperforms the winner of the 2018 SyGuS competition (Inv track), solving more problems and achieving a $5\times$ mean speedup.Comment: 24 pages (5 pages of appendices), 7 figures, includes proofs of theorem

A Theory of Formal Synthesis via Inductive Learning

Formal synthesis is the process of generating a program satisfying a high-level formal specification. In recent times, effective formal synthesis methods have been proposed based on the use of inductive learning. We refer to this class of methods that learn programs from examples as formal inductive synthesis. In this paper, we present a theoretical framework for formal inductive synthesis. We discuss how formal inductive synthesis differs from traditional machine learning. We then describe oracle-guided inductive synthesis (OGIS), a framework that captures a family of synthesizers that operate by iteratively querying an oracle. An instance of OGIS that has had much practical impact is counterexample-guided inductive synthesis (CEGIS). We present a theoretical characterization of CEGIS for learning any program that computes a recursive language. In particular, we analyze the relative power of CEGIS variants where the types of counterexamples generated by the oracle varies. We also consider the impact of bounded versus unbounded memory available to the learning algorithm. In the special case where the universe of candidate programs is finite, we relate the speed of convergence to the notion of teaching dimension studied in machine learning theory. Altogether, the results of the paper take a first step towards a theoretical foundation for the emerging field of formal inductive synthesis

On Counterexample Guided Quantifier Instantiation for Synthesis in CVC4

We introduce the first program synthesis engine implemented inside an SMT solver. We present an approach that extracts solution functions from unsatisfiability proofs of the negated form of synthesis conjectures. We also discuss novel counterexample-guided techniques for quantifier instantiation that we use to make finding such proofs practically feasible. A particularly important class of specifications are single-invocation properties, for which we present a dedicated algorithm. To support syntax restrictions on generated solutions, our approach can transform a solution found without restrictions into the desired syntactic form. As an alternative, we show how to use evaluation function axioms to embed syntactic restrictions into constraints over algebraic datatypes, and then use an algebraic datatype decision procedure to drive synthesis. Our experimental evaluation on syntax-guided synthesis benchmarks shows that our implementation in the CVC4 SMT solver is competitive with state-of-the-art tools for synthesis

A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS.

Small nucleolar RNAs (snoRNAs) are a diverse group of non-coding RNAs that direct chemical modifications at specific residues on other RNA molecules, primarily on ribosomal RNA (rRNA). SnoRNAs are altered in several cancers; however, their role in cell homeostasis as well as in cellular transformation remains poorly explored. Here, we show that specific subsets of snoRNAs are differentially regulated during the earliest cellular response to oncogenic RASG12V expression. We describe a novel function for one H/ACA snoRNA, SNORA24, which guides two pseudouridine modifications within the small ribosomal subunit, in RAS-induced senescence in vivo. We find that in mouse models, loss of Snora24 cooperates with RASG12V to promote the development of liver cancer that closely resembles human steatohepatitic hepatocellular carcinoma (HCC). From a clinical perspective, we further show that human HCCs with low SNORA24 expression display increased lipid content and are associated with poor patient survival. We next asked whether ribosomes lacking SNORA24-guided pseudouridine modifications on 18S rRNA have alterations in their biophysical properties. Single-molecule Fluorescence Resonance Energy Transfer (FRET) analyses revealed that these ribosomes exhibit perturbations in aminoacyl-transfer RNA (aa-tRNA) selection and altered pre-translocation ribosome complex dynamics. Furthermore, we find that HCC cells lacking SNORA24-guided pseudouridine modifications have increased translational miscoding and stop codon readthrough frequencies. These findings highlight a role for specific snoRNAs in safeguarding against oncogenic insult and demonstrate a functional link between H/ACA snoRNAs regulated by RAS and the biophysical properties of ribosomes in cancer