683 research outputs found
Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer's Disease
Visualizing and interpreting convolutional neural networks (CNNs) is an
important task to increase trust in automatic medical decision making systems.
In this study, we train a 3D CNN to detect Alzheimer's disease based on
structural MRI scans of the brain. Then, we apply four different gradient-based
and occlusion-based visualization methods that explain the network's
classification decisions by highlighting relevant areas in the input image. We
compare the methods qualitatively and quantitatively. We find that all four
methods focus on brain regions known to be involved in Alzheimer's disease,
such as inferior and middle temporal gyrus. While the occlusion-based methods
focus more on specific regions, the gradient-based methods pick up distributed
relevance patterns. Additionally, we find that the distribution of relevance
varies across patients, with some having a stronger focus on the temporal lobe,
whereas for others more cortical areas are relevant. In summary, we show that
applying different visualization methods is important to understand the
decisions of a CNN, a step that is crucial to increase clinical impact and
trust in computer-based decision support systems.Comment: MLCN 201
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Segmentation of Intracranial Arterial Calcification with Deeply Supervised Residual Dropout Networks
Intracranial carotid artery calcification (ICAC) is a major risk factor for
stroke, and might contribute to dementia and cognitive decline. Reliance on
time-consuming manual annotation of ICAC hampers much demanded further research
into the relationship between ICAC and neurological diseases. Automation of
ICAC segmentation is therefore highly desirable, but difficult due to the
proximity of the lesions to bony structures with a similar attenuation
coefficient. In this paper, we propose a method for automatic segmentation of
ICAC; the first to our knowledge. Our method is based on a 3D fully
convolutional neural network that we extend with two regularization techniques.
Firstly, we use deep supervision (hidden layers supervision) to encourage
discriminative features in the hidden layers. Secondly, we augment the network
with skip connections, as in the recently developed ResNet, and dropout layers,
inserted in a way that skip connections circumvent them. We investigate the
effect of skip connections and dropout. In addition, we propose a simple
problem-specific modification of the network objective function that restricts
the focus to the most important image regions and simplifies the optimization.
We train and validate our model using 882 CT scans and test on 1,000. Our
regularization techniques and objective improve the average Dice score by 7.1%,
yielding an average Dice of 76.2% and 97.7% correlation between predicted ICAC
volumes and manual annotations.Comment: Accepted for MICCAI 201
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