Design and Analysis of Soft-Error Resilience Mechanisms for GPU Register File

Modern graphics processing units (GPUs) are using increasingly larger register file (RF) which occupies a large fraction of GPU core area and is very frequently access ed. This makes RF vulnerable to soft-errors (SE). In this paper, we present two techniques for improving SE resilience of GPU RF . First, we propose compressing the RF values for reducing the number of vulnerable bits. We leverage value similarity and the presence of narrow-width values to perform compression at warp or thread-level, respectively. Second, we propose sel ective hardening to design a portion of register entry with SE immun e circuits. By collectively using these techniques, higher r esilience can be provided with lower overhead. Without hardening, our warp and thread-level compression techniques bring 47.0% and 40.8% reduction in SE vulnerability, respectively

GPGPU Reliability Analysis: From Applications to Large Scale Systems

Over the past decade, GPUs have become an integral part of mainstream high-performance computing (HPC) facilities. Since applications running on HPC systems are usually long-running, any error or failure could result in significant loss in scientific productivity and system resources. Even worse, since HPC systems face severe resilience challenges as progressing towards exascale computing, it is imperative to develop a better understanding of the reliability of GPUs. This dissertation fills this gap by providing an understanding of the effects of soft errors on the entire system and on specific applications. To understand system-level reliability, a large-scale study on GPU soft errors in the field is conducted. The occurrences of GPU soft errors are linked to several temporal and spatial features, such as specific workloads, node location, temperature, and power consumption. Further, machine learning models are proposed to predict error occurrences on GPU nodes so as to proactively and dynamically turning on/off the costly error protection mechanisms based on prediction results. To understand the effects of soft errors at the application level, an effective fault-injection framework is designed aiming to understand the reliability and resilience characteristics of GPGPU applications. This framework is effective in terms of reducing the tremendous number of fault injection locations to a manageable size while still preserving remarkable accuracy. This framework is validated with both single-bit and multi-bit fault models for various GPGPU benchmarks. Lastly, taking advantage of the proposed fault-injection framework, this dissertation develops a hierarchical approach to understanding the error resilience characteristics of GPGPU applications at kernel, CTA, and warp levels. In addition, given that some corrupted application outputs due to soft errors may be acceptable, we present a use case to show how to enable low-overhead yet reliable GPU computing for GPGPU applications

ASCR/HEP Exascale Requirements Review Report

This draft report summarizes and details the findings, results, and recommendations derived from the ASCR/HEP Exascale Requirements Review meeting held in June, 2015. The main conclusions are as follows. 1) Larger, more capable computing and data facilities are needed to support HEP science goals in all three frontiers: Energy, Intensity, and Cosmic. The expected scale of the demand at the 2025 timescale is at least two orders of magnitude -- and in some cases greater -- than that available currently. 2) The growth rate of data produced by simulations is overwhelming the current ability, of both facilities and researchers, to store and analyze it. Additional resources and new techniques for data analysis are urgently needed. 3) Data rates and volumes from HEP experimental facilities are also straining the ability to store and analyze large and complex data volumes. Appropriately configured leadership-class facilities can play a transformational role in enabling scientific discovery from these datasets. 4) A close integration of HPC simulation and data analysis will aid greatly in interpreting results from HEP experiments. Such an integration will minimize data movement and facilitate interdependent workflows. 5) Long-range planning between HEP and ASCR will be required to meet HEP's research needs. To best use ASCR HPC resources the experimental HEP program needs a) an established long-term plan for access to ASCR computational and data resources, b) an ability to map workflows onto HPC resources, c) the ability for ASCR facilities to accommodate workflows run by collaborations that can have thousands of individual members, d) to transition codes to the next-generation HPC platforms that will be available at ASCR facilities, e) to build up and train a workforce capable of developing and using simulations and analysis to support HEP scientific research on next-generation systems.Comment: 77 pages, 13 Figures; draft report, subject to further revisio

Towards scalable adaptive mesh refinement on future parallel architectures

In the march towards exascale, supercomputer architectures are undergoing a significant change. Limited by power consumption and heat dissipation, future supercomputers are likely to be built around a lower-power many-core model. This shift in supercomputer design will require sweeping code changes in order to take advantage of the highly-parallel architectures. Evolving or rewriting legacy applications to perform well on these machines is a significant challenge. Mini-applications, small computer programs that represent the performance characteristics of some larger application, can be used to investigate new programming models and improve the performance of the legacy application by proxy. These applications, being both easy to modify and representative, are essential for establishing a path to move legacy applications into the exascale era. The focus of the work presented in this thesis is the design, development and employment of a new mini-application, CleverLeaf, for shock hydro- dynamics with block-structured adaptive mesh refinement (AMR). We report on the development of CleverLeaf, and show how the fresh start provided by a mini-application can be used to develop an application that is flexible, accurate, and easy to employ in the investigation of exascale architectures. We also detail the development of the first reported resident parallel block-structured AMR library for Graphics Processing Units (GPUs). Extending the SAMRAI library using the CUDA programming model, we develop datatypes that store data only in GPU memory, as well the necessary operators for moving and interpolating data on an adaptive mesh. We show that executing AMR simulations on a GPU is up to 4.8⇥ faster than a CPU, and demonstrate scalability on over 4,000 nodes using a combination of CUDA and MPI. Finally, we show how mini-applications can be employed to improve the performance of production applications on existing parallel architectures by selecting the optimal application configuration. Using CleverLeaf, we identify the most appropriate configurations on three contemporary supercomputer architectures. Selecting the best parameters for our application can reduce run-time by up to 82% and reduce memory usage by up to 32%

GPU 에러 안정성 보장을 위한 컴파일러 기법

학위논문 (박사) -- 서울대학교 대학원 : 공과대학 전기·컴퓨터공학부, 2020. 8. 이재진.Due to semiconductor technology scaling and near-threshold voltage computing, soft error resilience has become more important. Nowadays, GPUs are widely used in high performance computing (HPC) because of its efficient parallel processing and modern GPUs designed for HPC use error correction code (ECC) to protect their storage including register files. However, adopting ECC in the register file imposes high area and energy overhead. To replace the expensive hardware cost of ECC, we propose Penny, a lightweight compiler-directed resilience scheme for GPU register file protection. We combine recent advances in idempotent recovery with low-cost error detection code. Our approach focuses on solving two important problems: 1. Can we guarantee correct error recovery using idempotent execution with error detection code? We show that when an error detection code is used with idempotence recovery, certain restrictions required by previous idempotent recovery schemes are no longer needed. We also propose a software-based scheme to prevent the checkpoint value from being overwritten before the end of the region where the value is required for correct recovery. 2. How do we reduce the execution overhead caused by checkpointing? In GPUs additional checkpointing store instructions inflicts considerably higher overhead compared to CPUs, due to its architectural characteristics, such as lack of store buffers. We propose a number of compiler optimizations techniques that significantly reduce the overhead.반도체 미세공정 기술이 발전하고 문턱전압 근처 컴퓨팅(near-threashold voltage computing)이 도입됨에 따라서 소프트 에러로부터의 복원이 중요한 과제가 되었다. 강력한 병렬 계산 성능을 지닌 GPU는 고성능 컴퓨팅에서 중요한 위치를 차지하게 되었고, 슈퍼 컴퓨터에서 쓰이는 GPU들은 에러 복원 코드인 ECC를 사용하여 레지스터 파일 및 메모리 등에 저장된 데이터를 보호하게 되었다. 하지만 레지스터 파일에 ECC를 사용하는 것은 큰 하드웨어나 에너지 비용을 필요로 한다. 이런 값비싼 ECC의 하드웨어 비용을 줄이기 위해 본 논문에서는 컴파일러 기반의 저비용 GPU 레지스터 파일 복원 기법인 Penny를 제안한다. 이는 최신의 멱등성(idempotency) 기반 에러 복원 기법을 저비용의 에러 검출 코드(EDC)와 결합한 것이다. 본 논문은 다음 두가지 문제를 해결하는 데에 집중한다. 1. 에러 검출 코드 기반으로 멱등성 기반 에러 복원을 사용시 소프트 에러로부터의 안전한 복원을 보장할 수 있는가?} 본 논문에서는 에러 검출 코드가 멱등성 기반 복원 기술과 같이 사용되었을 경우 기존의 복원 기법에서 필요로 했던 조건들 없이도 안전하게 에러로부터 복원할 수 있음을 보인다. 2. 체크포인팅에드는 비용을 어떻게 절감할 수 있는가?} GPU는 스토어 버퍼가 없는 등 아키텍쳐적인 특성으로 인해서 CPU와 비교하여 체크포인트 값을 저장하는 데에 큰 오버헤드가 든다. 이 문제를 해결하기 위해 본 논문에서는 다양한 컴파일러 최적화 기법을 통하여 오버헤드를 줄인다.1 Introduction 1 1.1 Why is Soft Error Resilience Important in GPUs 1 1.2 How can the ECC Overhead be Reduced 3 1.3 What are the Challenges 4 1.4 How do We Solve the Challenges 5 2 Comparison of Error Detection and Correction Coding Schemes for Register File Protection 7 2.1 Error Correction Codes and Error Detection Codes 8 2.2 Cost of Coding Schemes 9 2.3 Soft Error Frequency of GPUs 11 3 Idempotent Recovery and Challenges 13 3.1 Idempotent Execution 13 3.2 Previous Idempotent Schemes 13 3.2.1 De Kruijf's Idempotent Translation 14 3.2.2 Bolts's Idempotent Recovery 15 3.2.3 Comparison between Idempotent Schemes 15 3.3 Idempotent Recovery Process 17 3.4 Idempotent Recovery Challenges for GPUs 18 3.4.1 Checkpoint Overwriting 20 3.4.2 Performance Overhead 20 4 Correctness of Recovery 22 4.1 Proof of Safe Recovery 23 4.1.1 Prevention of Error Propagation 23 4.1.2 Proof of Correct State Recovery 24 4.1.3 Correctness in Multi-Threaded Execution 28 4.2 Preventing Checkpoint Overwriting 30 4.2.1 Register renaming 31 4.2.2 Storage Alternation by Checkpoint Coloring 33 4.2.3 Automatic Algorithm Selection 38 4.2.4 Future Works 38 5 Performance Optimizations 40 5.1 Compilation Phases of Penny 40 5.1.1 Region Formation 41 5.1.2 Bimodal Checkpoint Placement 41 5.1.3 Storage Alternation 42 5.1.4 Checkpoint Pruning 43 5.1.5 Storage Assignment 44 5.1.6 Code Generation and Low-level Optimizations 45 5.2 Cost Estimation Model 45 5.3 Region Formation 46 5.3.1 De Kruijf's Heuristic Region Formation 46 5.3.2 Region splitting and Region Stitching 47 5.3.3 Checkpoint-Cost Aware Optimal Region Formation 48 5.4 Bimodal Checkpoint Placement 52 5.5 Optimal Checkpoint Pruning 55 5.5.1 Bolt's Naive Pruning Algorithm and Overview of Penny's Optimal Pruning Algorithm 55 5.5.2 Phase 1: Collecting Global-Decision Independent Status 56 5.5.3 Phase2: Ordering and Finalizing Renaming Decisions 60 5.5.4 Effectiveness of Eliminating the Checkpoints 63 5.6 Automatic Checkpoint Storage Assignment 69 5.7 Low-Level Optimizations and Code Generation 70 6 Evaluation 74 6.1 Test Environment 74 6.1.1 GPU Architecture and Simulation Setup 74 6.1.2 Tested Applications 75 6.1.3 Register Assignment 76 6.2 Performance Evaluation 77 6.2.1 Overall Performance Overheads 77 6.2.2 Impact of Penny's Optimizations 78 6.2.3 Assigning Checkpoint Storage and Its Integrity 79 6.2.4 Impact of Optimal Checkpoint Pruning 80 6.2.5 Impact of Alias Analysis 81 6.3 Repurposing the Saved ECC Area 82 6.4 Energy Impact on Execution 83 6.5 Performance Overhead on Volta Architecture 85 6.6 Compilation Time 85 7 RelatedWorks 87 8 Conclusion and Future Works 89 8.1 Limitation and Future Work 90Docto

Accelerating Network Communication and I/O in Scientific High Performance Computing Environments

High performance computing has become one of the major drivers behind technology inventions and science discoveries. Originally driven through the increase of operating frequencies and technology scaling, a recent slowdown in this evolution has led to the development of multi-core architectures, which are supported by accelerator devices such as graphics processing units (GPUs). With the upcoming exascale era, the overall power consumption and the gap between compute capabilities and I/O bandwidth have become major challenges. Nowadays, the system performance is dominated by the time spent in communication and I/O, which highly depends on the capabilities of the network interface. In order to cope with the extreme concurrency and heterogeneity of future systems, the software ecosystem of the interconnect needs to be carefully tuned to excel in reliability, programmability, and usability. This work identifies and addresses three major gaps in today's interconnect software systems. The I/O gap describes the disparity in operating speeds between the computing capabilities and second storage tiers. The communication gap is introduced through the communication overhead needed to synchronize distributed large-scale applications and the mixed workload. The last gap is the so called concurrency gap, which is introduced through the extreme concurrency and the inflicted learning curve posed to scientific application developers to exploit the hardware capabilities. The first contribution is the introduction of the network-attached accelerator approach, which moves accelerators into a "stand-alone" cluster connected through the Extoll interconnect. The novel communication architecture enables the direct accelerators communication without any host interactions and an optimal application-to-compute-resources mapping. The effectiveness of this approach is evaluated for two classes of accelerators: Intel Xeon Phi coprocessors and NVIDIA GPUs. The next contribution comprises the design, implementation, and evaluation of the support of legacy codes and protocols over the Extoll interconnect technology. By providing TCP/IP protocol support over Extoll, it is shown that the performance benefits of the interconnect can be fully leveraged by a broader range of applications, including the seamless support of legacy codes. The third contribution is twofold. First, a comprehensive analysis of the Lustre networking protocol semantics and interfaces is presented. Afterwards, these insights are utilized to map the LNET protocol semantics onto the Extoll networking technology. The result is a fully functional Lustre network driver for Extoll. An initial performance evaluation demonstrates promising bandwidth and message rate results. The last contribution comprises the design, implementation, and evaluation of two easy-to-use load balancing frameworks, which transparently distribute the I/O workload across all available storage system components. The solutions maximize the parallelization and throughput of file I/O. The frameworks are evaluated on the Titan supercomputing systems for three I/O interfaces. For example for large-scale application runs, POSIX I/O and MPI-IO can be improved by up to 50% on a per job basis, while HDF5 shows performance improvements of up to 32%