Four-Dimensional Homogeneous Systolic Pyramid Automata

Cellular automaton is famous as a kind of the parallel automaton. Cellular automata were investigated not only in the viewpoint of formal language theory, but also in the viewpoint of pattern recognition. Cellular automata can be classified into some types. A systolic pyramid automata is also one parallel model of various cellular automata. A homogeneous systolic pyramid automaton with four-dimensional layers (4-HSPA) is a pyramid stack of four-dimensional arrays of cells in which the bottom four-dimensional layer (level 0) has size an (a≥1), the next lowest 4(a-1), and so forth, the (a-1)st fourdimensional layer (level (a-1)) consisting of a single cell, called the root. Each cell means an identical finite-state machine. The input is accepted if and only if the root cell ever enters an accepting state. A 4-HSPA is said to be a real-time 4-HSPA if for every four-dimensional tape of size 4a (a≥1), it accepts the fourdimensional tape in time a-1. Moreover, a 1- way fourdimensional cellular automaton (1-4CA) can be considered as a natural extension of the 1-way two-dimensional cellular automaton to four-dimension. The initial configuration is accepted if the last special cell reaches a final state. A 1-4CA is said to be a real- time 1-4CA if when started with fourdimensional array of cells in nonquiescent state, the special cell reaches a final state. In this paper, we proposed a homogeneous systolic automaton with four-dimensional layers (4-HSPA), and investigated some properties of real-time 4-HSPA. Specifically, we first investigated the relationship between the accepting powers of real-time 4-HSPA’s and real-time 1-4CA’s. We next showed the recognizability of four-dimensional connected tapes by real-time 4-HSPA’s

On the Computational Power of DNA Annealing and Ligation

In [20] it was shown that the DNA primitives of Separate, Merge, and Amplify were not sufficiently powerful to invert functions defined by circuits in linear time. Dan Boneh et al [4] show that the addition of a ligation primitive, Append, provides the missing power. The question becomes, "How powerful is ligation? Are Separate, Merge, and Amplify necessary at all?" This paper proposes to informally explore the power of annealing and ligation for DNA computation. We conclude, in fact, that annealing and ligation alone are theoretically capable of universal computation

Counter Machines and Distributed Automata: A Story about Exchanging Space and Time

We prove the equivalence of two classes of counter machines and one class of distributed automata. Our counter machines operate on finite words, which they read from left to right while incrementing or decrementing a fixed number of counters. The two classes differ in the extra features they offer: one allows to copy counter values, whereas the other allows to compute copyless sums of counters. Our distributed automata, on the other hand, operate on directed path graphs that represent words. All nodes of a path synchronously execute the same finite-state machine, whose state diagram must be acyclic except for self-loops, and each node receives as input the state of its direct predecessor. These devices form a subclass of linear-time one-way cellular automata.Comment: 15 pages (+ 13 pages of appendices), 5 figures; To appear in the proceedings of AUTOMATA 2018

Decidability and Universality in Symbolic Dynamical Systems

Many different definitions of computational universality for various types of dynamical systems have flourished since Turing's work. We propose a general definition of universality that applies to arbitrary discrete time symbolic dynamical systems. Universality of a system is defined as undecidability of a model-checking problem. For Turing machines, counter machines and tag systems, our definition coincides with the classical one. It yields, however, a new definition for cellular automata and subshifts. Our definition is robust with respect to initial condition, which is a desirable feature for physical realizability. We derive necessary conditions for undecidability and universality. For instance, a universal system must have a sensitive point and a proper subsystem. We conjecture that universal systems have infinite number of subsystems. We also discuss the thesis according to which computation should occur at the `edge of chaos' and we exhibit a universal chaotic system.Comment: 23 pages; a shorter version is submitted to conference MCU 2004 v2: minor orthographic changes v3: section 5.2 (collatz functions) mathematically improved v4: orthographic corrections, one reference added v5:27 pages. Important modifications. The formalism is strengthened: temporal logic replaced by finite automata. New results. Submitte

Prolegomena to an operator theory of computation

Defining computation as information processing (information dynamics) with information as a relational property of data structures (the difference in one system that makes a difference in another system) makes it very suitable to use operator formulation, with similarities to category theory. The concept of the operator is exceedingly important in many knowledge areas as a tool of theoretical studies and practical applications. Here we introduce the operator theory of computing, opening new opportunities for the exploration of computing devices, processes, and their networks

Characterization of real time iterative array by alternating device

AbstractIn this paper, we show that real time k-dimensional iterative arrays are equivalent through reverse to real time one-way alternating k-counter automata