2,056 research outputs found
Ensemble Inhibition and Excitation in the Human Cortex: an Ising Model Analysis with Uncertainties
The pairwise maximum entropy model, also known as the Ising model, has been
widely used to analyze the collective activity of neurons. However, controversy
persists in the literature about seemingly inconsistent findings, whose
significance is unclear due to lack of reliable error estimates. We therefore
develop a method for accurately estimating parameter uncertainty based on
random walks in parameter space using adaptive Markov Chain Monte Carlo after
the convergence of the main optimization algorithm. We apply our method to the
spiking patterns of excitatory and inhibitory neurons recorded with
multielectrode arrays in the human temporal cortex during the wake-sleep cycle.
Our analysis shows that the Ising model captures neuronal collective behavior
much better than the independent model during wakefulness, light sleep, and
deep sleep when both excitatory (E) and inhibitory (I) neurons are modeled;
ignoring the inhibitory effects of I-neurons dramatically overestimates
synchrony among E-neurons. Furthermore, information-theoretic measures reveal
that the Ising model explains about 80%-95% of the correlations, depending on
sleep state and neuron type. Thermodynamic measures show signatures of
criticality, although we take this with a grain of salt as it may be merely a
reflection of long-range neural correlations.Comment: 17 pages, 8 figure
On Neuromechanical Approaches for the Study of Biological Grasp and Manipulation
Biological and robotic grasp and manipulation are undeniably similar at the
level of mechanical task performance. However, their underlying fundamental
biological vs. engineering mechanisms are, by definition, dramatically
different and can even be antithetical. Even our approach to each is
diametrically opposite: inductive science for the study of biological systems
vs. engineering synthesis for the design and construction of robotic systems.
The past 20 years have seen several conceptual advances in both fields and the
quest to unify them. Chief among them is the reluctant recognition that their
underlying fundamental mechanisms may actually share limited common ground,
while exhibiting many fundamental differences. This recognition is particularly
liberating because it allows us to resolve and move beyond multiple paradoxes
and contradictions that arose from the initial reasonable assumption of a large
common ground. Here, we begin by introducing the perspective of neuromechanics,
which emphasizes that real-world behavior emerges from the intimate
interactions among the physical structure of the system, the mechanical
requirements of a task, the feasible neural control actions to produce it, and
the ability of the neuromuscular system to adapt through interactions with the
environment. This allows us to articulate a succinct overview of a few salient
conceptual paradoxes and contradictions regarding under-determined vs.
over-determined mechanics, under- vs. over-actuated control, prescribed vs.
emergent function, learning vs. implementation vs. adaptation, prescriptive vs.
descriptive synergies, and optimal vs. habitual performance. We conclude by
presenting open questions and suggesting directions for future research. We
hope this frank assessment of the state-of-the-art will encourage and guide
these communities to continue to interact and make progress in these important
areas
Information flow through a model of the C. elegans klinotaxis circuit
Understanding how information about external stimuli is transformed into
behavior is one of the central goals of neuroscience. Here we characterize the
information flow through a complete sensorimotor circuit: from stimulus, to
sensory neurons, to interneurons, to motor neurons, to muscles, to motion.
Specifically, we apply a recently developed framework for quantifying
information flow to a previously published ensemble of models of salt
klinotaxis in the nematode worm C. elegans. The models are grounded in the
neuroanatomy and currently known neurophysiology of the worm. The unknown model
parameters were optimized to reproduce the worm's behavior. Information flow
analysis reveals several key principles underlying how the models operate: (1)
Interneuron class AIY is responsible for integrating information about positive
and negative changes in concentration, and exhibits a strong left/right
information asymmetry. (2) Gap junctions play a crucial role in the transfer of
information responsible for the information symmetry observed in interneuron
class AIZ. (3) Neck motor neuron class SMB implements an information gating
mechanism that underlies the circuit's state-dependent response. (4) The neck
carries non-uniform distribution about changes in concentration. Thus, not all
directions of movement are equally informative. Each of these findings
corresponds to an experimental prediction that could be tested in the worm to
greatly refine our understanding of the neural circuit underlying klinotaxis.
Information flow analysis also allows us to explore how information flow
relates to underlying electrophysiology. Despite large variations in the neural
parameters of individual circuits, the overall information flow architecture
circuit is remarkably consistent across the ensemble, suggesting that
information flow analysis captures general principles of operation for the
klinotaxis circuit
Evolution and Analysis of Embodied Spiking Neural Networks Reveals Task-Specific Clusters of Effective Networks
Elucidating principles that underlie computation in neural networks is
currently a major research topic of interest in neuroscience. Transfer Entropy
(TE) is increasingly used as a tool to bridge the gap between network
structure, function, and behavior in fMRI studies. Computational models allow
us to bridge the gap even further by directly associating individual neuron
activity with behavior. However, most computational models that have analyzed
embodied behaviors have employed non-spiking neurons. On the other hand,
computational models that employ spiking neural networks tend to be restricted
to disembodied tasks. We show for the first time the artificial evolution and
TE-analysis of embodied spiking neural networks to perform a
cognitively-interesting behavior. Specifically, we evolved an agent controlled
by an Izhikevich neural network to perform a visual categorization task. The
smallest networks capable of performing the task were found by repeating
evolutionary runs with different network sizes. Informational analysis of the
best solution revealed task-specific TE-network clusters, suggesting that
within-task homogeneity and across-task heterogeneity were key to behavioral
success. Moreover, analysis of the ensemble of solutions revealed that
task-specificity of TE-network clusters correlated with fitness. This provides
an empirically testable hypothesis that links network structure to behavior.Comment: Camera ready version of accepted for GECCO'1
Information transmission in oscillatory neural activity
Periodic neural activity not locked to the stimulus or to motor responses is
usually ignored. Here, we present new tools for modeling and quantifying the
information transmission based on periodic neural activity that occurs with
quasi-random phase relative to the stimulus. We propose a model to reproduce
characteristic features of oscillatory spike trains, such as histograms of
inter-spike intervals and phase locking of spikes to an oscillatory influence.
The proposed model is based on an inhomogeneous Gamma process governed by a
density function that is a product of the usual stimulus-dependent rate and a
quasi-periodic function. Further, we present an analysis method generalizing
the direct method (Rieke et al, 1999; Brenner et al, 2000) to assess the
information content in such data. We demonstrate these tools on recordings from
relay cells in the lateral geniculate nucleus of the cat.Comment: 18 pages, 8 figures, to appear in Biological Cybernetic
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