Kernel-assisted and Topology-aware MPI Collective Communication among Multicore or Many-core Clusters

Multicore or many-core clusters have become the most prominent form of High Performance Computing (HPC) systems. Hardware complexity and hierarchies not only exist in the inter-node layer, i.e., hierarchical networks, but also exist in internals of multicore compute nodes, e.g., Non Uniform Memory Accesses (NUMA), network-style interconnect, and memory and shared cache hierarchies. Message Passing Interface (MPI), the most widely adopted in the HPC communities, suffers from decreased performance and portability due to increased hardware complexity of multiple levels. We identified three critical issues specific to collective communication: The first problem arises from the gap between logical collective topologies and underlying hardware topologies; Second, current MPI communications lack efficient shared memory message delivering approaches; Last, on distributed memory machines, like multicore clusters, a single approach cannot encompass the extreme variations not only in the bandwidth and latency capabilities, but also in features such as the aptitude to operate multiple concurrent copies simultaneously. To bridge the gap between logical collective topologies and hardware topologies, we developed a distance-aware framework to integrate the knowledge of hardware distance into collective algorithms in order to dynamically reshape the communication patterns to suit the hardware capabilities. Based on process distance information, we used graph partitioning techniques to organize the MPI processes in a multi-level hierarchy, mapping on the hardware characteristics. Meanwhile, we took advantage of the kernel-assisted one-sided single-copy approach (KNEM) as the default shared memory delivering method. Via kernel-assisted memory copy, the collective algorithms offload copy tasks onto non-leader/not-root processes to evenly distribute copy workloads among available cores. Finally, on distributed memory machines, we developed a technique to compose multi-layered collective algorithms together to express a multi-level algorithm with tight interoperability between the levels. This tight collaboration results in more overlaps between inter- and intra-node communication. Experimental results have confirmed that, by leveraging several technologies together, such as kernel-assisted memory copy, the distance-aware framework, and collective algorithm composition, not only do MPI collectives reach the potential maximum performance on a wide variation of platforms, but they also deliver a level of performance immune to modifications of the underlying process-core binding

Improving the Performance of the MPI_Allreduce Collective Operation through Rank Renaming

Proceedings of: First International Workshop on Sustainable Ultrascale Computing Systems (NESUS 2014). Porto (Portugal), August 27-28, 2014.Collective operations, a key issue in the global efficiency of HPC applications, are optimized in current MPI libraries by choosing at runtime between a set of algorithms, based on platform-dependent beforehand established parameters, as the message size or the number of processes. However, with progressively more cores per node, the cost of a collective algorithm must be mainly imputed to process-to-processor mapping, because its decisive influence over the network traffic. Hierarchical design of collective algorithms pursuits to minimize the data movement through the slowest communication channels of the multi-core cluster. Nevertheless, the hierarchical implementation of some collectives becomes inefficient, and even impracticable, due to the operation definition itself. This paper proposes a new approach that departs from a frequently found regular mapping, either sequential or round-robin. While keeping the mapping, the rank assignation to the processes is temporarily changed prior to the execution of the collective algorithm. The new assignation makes the communication pattern to adapt to the communication channels hierarchy. We explore this technique for the Ring algorithm when used in the well-known MPI_Allreduce collective, and discuss the obtained performance results. Extensions to other algorithms and collective operations are proposed.The work presented in this paper has been partially supported by EU under the COST programme Action IC1305, ’Network for Sustainable Ultrascale Computing (NESUS)’, and by the computing facilities of Extremadura Research Centre for Advanced Technologies (CETACIEMAT), funded by the European Regional Development Fund (ERDF). CETA-CIEMAT belongs to CIEMAT and the Government of Spain

Optimization of MPI Collective Communication Operations

High-performance computing (HPC) systems keep growing in scale and heterogeneity to satisfy the increasing need for computation, and this brings new challenges to the design of Message Passing Interface (MPI) libraries, especially with regard to collective operations.The implementations of state-of-the-art MPI collective operations heavily rely on synchronizations, and these implementations magnify noise across the participating processes, resulting in significant performance slowdowns. Therefore, I create a new collective communication framework in Open MPI, using an event-driven design to relax synchronizations and maintain the minimal data dependencies of MPI collective operations.The recent growth in hardware heterogeneity results in increasingly complex hardware hierarchies and larger communication performance differences.Hence, in this dissertation, I present two approaches to perform hierarchical collective operations, and both can exploit the different bandwidths of hardware in heterogeneous systems and maximizing concurrent communications.Finally, to provide a fast and accurate autotuning mechanism for my framework, I design a new autotuning approach by combining two existing methods. This new approach significantly reduces the search space to save the autotuning time and is still able to provide accurate estimations.I evaluate my work with microbenchmarks and applications at different scales. Microbenchmark results show my work speedups MPI_Bcast and MPI_Allreduce up to 7.34X and 4.86X, respectively, on 4096 processes.In terms of applications, I achieve a 24.3% improvement for Hovorod and a 143% improvement for ASP on 1536 processes as compared to the current Open MPI

A Framework for Adaptive Collective Communications on Heterogeneous Hierarchical Networks

Extended version of the IPDPS 2006 paperToday, due to the wide variety of existing parallel systems consisting on collections of heterogeneous machines, it is very difficult for a user to solve a target problem by using a single algorithm or to write portable programs that perform well on multiple computational supports. The inherent heterogeneity and the diversity of networks of such environments represent a great challenge to model the communications for high performance computing applications. Our objective within this work is to propose a generic framework based on communication models and adaptive techniques for dealing with prediction of communication performances on cluster-based hierarchical platforms. Toward this goal, we introduce the concept of polyalgorithmic model of communications, which correspond to selection of the most adapted communication algorithms and scheduling strategies, giving the characteristics of the hardware resources of the target parallel system. We apply this methodology on collective communication operations and show that the framework provides significant performances while determining the best algorithm depending on the problem and architecture parameters