25,763 research outputs found
Voxel selection in fMRI data analysis based on sparse representation
Multivariate pattern analysis approaches toward detection of brain regions from fMRI data have been gaining attention recently. In this study, we introduce an iterative sparse-representation-based algorithm for detection of voxels in functional MRI (fMRI) data with task relevant information. In each iteration of the algorithm, a linear programming problem is solved and a sparse weight vector is subsequently obtained. The final weight vector is the mean of those obtained in all iterations. The characteristics of our algorithm are as follows: 1) the weight vector (output) is sparse; 2) the magnitude of each entry of the weight vector represents the significance of its corresponding variable or feature in a classification or regression problem; and 3) due to the convergence of this algorithm, a stable weight vector is obtained. To demonstrate the validity of our algorithm and illustrate its application, we apply the algorithm to the Pittsburgh Brain Activity Interpretation Competition 2007 functional fMRI dataset for selecting the voxels, which are the most relevant to the tasks of the subjects. Based on this dataset, the aforementioned characteristics of our algorithm are analyzed, and a comparison between our method with the univariate general-linear-model-based statistical parametric mapping is performed. Using our method, a combination of voxels are selected based on the principle of effective/sparse representation of a task. Data analysis results in this paper show that this combination of voxels is suitable for decoding tasks and demonstrate the effectiveness of our method
Why Neurons Have Thousands of Synapses, A Theory of Sequence Memory in Neocortex
Neocortical neurons have thousands of excitatory synapses. It is a mystery
how neurons integrate the input from so many synapses and what kind of
large-scale network behavior this enables. It has been previously proposed that
non-linear properties of dendrites enable neurons to recognize multiple
patterns. In this paper we extend this idea by showing that a neuron with
several thousand synapses arranged along active dendrites can learn to
accurately and robustly recognize hundreds of unique patterns of cellular
activity, even in the presence of large amounts of noise and pattern variation.
We then propose a neuron model where some of the patterns recognized by a
neuron lead to action potentials and define the classic receptive field of the
neuron, whereas the majority of the patterns recognized by a neuron act as
predictions by slightly depolarizing the neuron without immediately generating
an action potential. We then present a network model based on neurons with
these properties and show that the network learns a robust model of time-based
sequences. Given the similarity of excitatory neurons throughout the neocortex
and the importance of sequence memory in inference and behavior, we propose
that this form of sequence memory is a universal property of neocortical
tissue. We further propose that cellular layers in the neocortex implement
variations of the same sequence memory algorithm to achieve different aspects
of inference and behavior. The neuron and network models we introduce are
robust over a wide range of parameters as long as the network uses a sparse
distributed code of cellular activations. The sequence capacity of the network
scales linearly with the number of synapses on each neuron. Thus neurons need
thousands of synapses to learn the many temporal patterns in sensory stimuli
and motor sequences.Comment: Submitted for publicatio
Learning and comparing functional connectomes across subjects
Functional connectomes capture brain interactions via synchronized
fluctuations in the functional magnetic resonance imaging signal. If measured
during rest, they map the intrinsic functional architecture of the brain. With
task-driven experiments they represent integration mechanisms between
specialized brain areas. Analyzing their variability across subjects and
conditions can reveal markers of brain pathologies and mechanisms underlying
cognition. Methods of estimating functional connectomes from the imaging signal
have undergone rapid developments and the literature is full of diverse
strategies for comparing them. This review aims to clarify links across
functional-connectivity methods as well as to expose different steps to perform
a group study of functional connectomes
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