Image Denoising using Attention-Residual Convolutional Neural Networks

During the image acquisition process, noise is usually added to the data mainly due to physical limitations of the acquisition sensor, and also regarding imprecisions during the data transmission and manipulation. In that sense, the resultant image needs to be processed to attenuate its noise without losing details. Non-learning-based strategies such as filter-based and noise prior modeling have been adopted to solve the image denoising problem. Nowadays, learning-based denoising techniques showed to be much more effective and flexible approaches, such as Residual Convolutional Neural Networks. Here, we propose a new learning-based non-blind denoising technique named Attention Residual Convolutional Neural Network (ARCNN), and its extension to blind denoising named Flexible Attention Residual Convolutional Neural Network (FARCNN). The proposed methods try to learn the underlying noise expectation using an Attention-Residual mechanism. Experiments on public datasets corrupted by different levels of Gaussian and Poisson noise support the effectiveness of the proposed approaches against some state-of-the-art image denoising methods. ARCNN achieved an overall average PSNR results of around 0.44dB and 0.96dB for Gaussian and Poisson denoising, respectively FARCNN presented very consistent results, even with slightly worsen performance compared to ARCNN.Comment: Published in: 2020 33rd SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI

Bilateral filter in image processing

The bilateral filter is a nonlinear filter that does spatial averaging without smoothing edges. It has shown to be an effective image denoising technique. It also can be applied to the blocking artifacts reduction. An important issue with the application of the bilateral filter is the selection of the filter parameters, which affect the results significantly. Another research interest of bilateral filter is acceleration of the computation speed. There are three main contributions of this thesis. The first contribution is an empirical study of the optimal bilateral filter parameter selection in image denoising. I propose an extension of the bilateral filter: multi resolution bilateral filter, where bilateral filtering is applied to the low-frequency sub-bands of a signal decomposed using a wavelet filter bank. The multi resolution bilateral filter is combined with wavelet thresholding to form a new image denoising framework, which turns out to be very effective in eliminating noise in real noisy images. The second contribution is that I present a spatially adaptive method to reduce compression artifacts. To avoid over-smoothing texture regions and to effectively eliminate blocking and ringing artifacts, in this paper, texture regions and block boundary discontinuities are first detected; these are then used to control/adapt the spatial and intensity parameters of the bilateral filter. The test results prove that the adaptive method can improve the quality of restored images significantly better than the standard bilateral filter. The third contribution is the improvement of the fast bilateral filter, in which I use a combination of multi windows to approximate the Gaussian filter more precisely

Recent Progress in Image Deblurring

This paper comprehensively reviews the recent development of image deblurring, including non-blind/blind, spatially invariant/variant deblurring techniques. Indeed, these techniques share the same objective of inferring a latent sharp image from one or several corresponding blurry images, while the blind deblurring techniques are also required to derive an accurate blur kernel. Considering the critical role of image restoration in modern imaging systems to provide high-quality images under complex environments such as motion, undesirable lighting conditions, and imperfect system components, image deblurring has attracted growing attention in recent years. From the viewpoint of how to handle the ill-posedness which is a crucial issue in deblurring tasks, existing methods can be grouped into five categories: Bayesian inference framework, variational methods, sparse representation-based methods, homography-based modeling, and region-based methods. In spite of achieving a certain level of development, image deblurring, especially the blind case, is limited in its success by complex application conditions which make the blur kernel hard to obtain and be spatially variant. We provide a holistic understanding and deep insight into image deblurring in this review. An analysis of the empirical evidence for representative methods, practical issues, as well as a discussion of promising future directions are also presented.Comment: 53 pages, 17 figure

A New Hybridization of Bilateral and Wavelet Filters for Noisy De-Noisy Images

In this work we propose, a hybrid noise reduction algorithm that is a combination of a spatial field binary filter and a hybrid wave field threshold function. These two methods are used to stop Gaussian noise. The hybrid filter is a nonlinear filter that deals with spatial averaging of non-uniform edges. We found it to be an effective technique for image reduction. Determining filter parameters for the mixed filter is important to avoid large differences in results, besides the issue of acceleration velocity. This hybrid model, binary filtering, and Wavelet Thresholding have tried standard images, such as normal eyes, MRI, Roya Face, Ultrasound, X-Ray, and Rawa. Different Gaussian noise was added with different standard deviations σ = 10, 20, 35, 40, and 50. The peak-to-noise ratio (PSNR) signal, MSE, VIF, IQI, and the proposed model MSE between pixels were used as quantitative measures of performance of the relative noise reduction algorithms and then were compared to the models

Computer-Assisted Algorithms for Ultrasound Imaging Systems

Ultrasound imaging works on the principle of transmitting ultrasound waves into the body and reconstructs the images of internal organs based on the strength of the echoes. Ultrasound imaging is considered to be safer, economical and can image the organs in real-time, which makes it widely used diagnostic imaging modality in health-care. Ultrasound imaging covers the broad spectrum of medical diagnostics; these include diagnosis of kidney, liver, pancreas, fetal monitoring, etc. Currently, the diagnosis through ultrasound scanning is clinic-centered, and the patients who are in need of ultrasound scanning has to visit the hospitals for getting the diagnosis. The services of an ultrasound system are constrained to hospitals and did not translate to its potential in remote health-care and point-of-care diagnostics due to its high form factor, shortage of sonographers, low signal to noise ratio, high diagnostic subjectivity, etc. In this thesis, we address these issues with an objective of making ultrasound imaging more reliable to use in point-of-care and remote health-care applications. To achieve the goal, we propose (i) computer-assisted algorithms to improve diagnostic accuracy and assist semi-skilled persons in scanning, (ii) speckle suppression algorithms to improve the diagnostic quality of ultrasound image, (iii) a reliable telesonography framework to address the shortage of sonographers, and (iv) a programmable portable ultrasound scanner to operate in point-of-care and remote health-care applications

Deep Representation Learning with Limited Data for Biomedical Image Synthesis, Segmentation, and Detection

Biomedical imaging requires accurate expert annotation and interpretation that can aid medical staff and clinicians in automating differential diagnosis and solving underlying health conditions. With the advent of Deep learning, it has become a standard for reaching expert-level performance in non-invasive biomedical imaging tasks by training with large image datasets. However, with the need for large publicly available datasets, training a deep learning model to learn intrinsic representations becomes harder. Representation learning with limited data has introduced new learning techniques, such as Generative Adversarial Networks, Semi-supervised Learning, and Self-supervised Learning, that can be applied to various biomedical applications. For example, ophthalmologists use color funduscopy (CF) and fluorescein angiography (FA) to diagnose retinal degenerative diseases. However, fluorescein angiography requires injecting a dye, which can create adverse reactions in the patients. So, to alleviate this, a non-invasive technique needs to be developed that can translate fluorescein angiography from fundus images. Similarly, color funduscopy and optical coherence tomography (OCT) are also utilized to semantically segment the vasculature and fluid build-up in spatial and volumetric retinal imaging, which can help with the future prognosis of diseases. Although many automated techniques have been proposed for medical image segmentation, the main drawback is the model's precision in pixel-wise predictions. Another critical challenge in the biomedical imaging field is accurately segmenting and quantifying dynamic behaviors of calcium signals in cells. Calcium imaging is a widely utilized approach to studying subcellular calcium activity and cell function; however, large datasets have yielded a profound need for fast, accurate, and standardized analyses of calcium signals. For example, image sequences from calcium signals in colonic pacemaker cells ICC (Interstitial cells of Cajal) suffer from motion artifacts and high periodic and sensor noise, making it difficult to accurately segment and quantify calcium signal events. Moreover, it is time-consuming and tedious to annotate such a large volume of calcium image stacks or videos and extract their associated spatiotemporal maps. To address these problems, we propose various deep representation learning architectures that utilize limited labels and annotations to address the critical challenges in these biomedical applications. To this end, we detail our proposed semi-supervised, generative adversarial networks and transformer-based architectures for individual learning tasks such as retinal image-to-image translation, vessel and fluid segmentation from fundus and OCT images, breast micro-mass segmentation, and sub-cellular calcium events tracking from videos and spatiotemporal map quantification. We also illustrate two multi-modal multi-task learning frameworks with applications that can be extended to other domains of biomedical applications. The main idea is to incorporate each of these as individual modules to our proposed multi-modal frameworks to solve the existing challenges with 1) Fluorescein angiography synthesis, 2) Retinal vessel and fluid segmentation, 3) Breast micro-mass segmentation, and 4) Dynamic quantification of calcium imaging datasets