On Languages Accepted by P/T Systems Composed of joins

Recently, some studies linked the computational power of abstract computing systems based on multiset rewriting to models of Petri nets and the computation power of these nets to their topology. In turn, the computational power of these abstract computing devices can be understood by just looking at their topology, that is, information flow. Here we continue this line of research introducing J languages and proving that they can be accepted by place/transition systems whose underlying net is composed only of joins. Moreover, we investigate how J languages relate to other families of formal languages. In particular, we show that every J language can be accepted by a log n space-bounded non-deterministic Turing machine with a one-way read-only input. We also show that every J language has a semilinear Parikh map and that J languages and context-free languages (CFLs) are incomparable

On Second-Order Monadic Monoidal and Groupoidal Quantifiers

We study logics defined in terms of second-order monadic monoidal and groupoidal quantifiers. These are generalized quantifiers defined by monoid and groupoid word-problems, equivalently, by regular and context-free languages. We give a computational classification of the expressive power of these logics over strings with varying built-in predicates. In particular, we show that ATIME(n) can be logically characterized in terms of second-order monadic monoidal quantifiers

Improved bounds for testing Dyck languages

In this paper we consider the problem of deciding membership in Dyck languages, a fundamental family of context-free languages, comprised of well-balanced strings of parentheses. In this problem we are given a string of length $n$ in the alphabet of parentheses of $m$ types and must decide if it is well-balanced. We consider this problem in the property testing setting, where one would like to make the decision while querying as few characters of the input as possible. Property testing of strings for Dyck language membership for $m=1$, with a number of queries independent of the input size $n$, was provided in [Alon, Krivelevich, Newman and Szegedy, SICOMP 2001]. Property testing of strings for Dyck language membership for $m \ge 2$ was first investigated in [Parnas, Ron and Rubinfeld, RSA 2003]. They showed an upper bound and a lower bound for distinguishing strings belonging to the language from strings that are far (in terms of the Hamming distance) from the language, which are respectively (up to polylogarithmic factors) the $2/3$ power and the $1/11$ power of the input size $n$. Here we improve the power of $n$ in both bounds. For the upper bound, we introduce a recursion technique, that together with a refinement of the methods in the original work provides a test for any power of $n$ larger than $2/5$. For the lower bound, we introduce a new problem called Truestring Equivalence, which is easily reducible to the $2$-type Dyck language property testing problem. For this new problem, we show a lower bound of $n$ to the power of $1/5$

Tree-size bounded alternation

AbstractThe size of an accepting computation tree of an alternating Turing machine (ATM) is introduced as a complexity measure. We present a number of applications of tree-size to the study of more traditional complexity classes. Tree-size on ATMs is shown to closely correspond to time on nondeterministic TMs and on nondeterministic auxiliary pushdown automata. One application of the later is a useful new characterization of the class of languages log-space-reducible to context-free languages. Surprising relationships with parallel-time complexity are also demonstrated. ATM computations using at most space S(n) and tree-size Z(n) (simultaneously) can be simulated in alternating space S(n) and time S(n) · log Z(n) (simultaneously). Several well-known simulations, e.g., Savitch's theorem, are special cases of this result. It also leads to improved parallel complexity bounds for many problems in terms of both time and number of “processors.” As one example we show that context-free language recognition in time O(log2 n) is possible on several parallel models. Further, this bound is achievable with only a polynomial number of processors, in contrast to all previously known sub-linear time CFL recognizers

Formal models of the extension activity of DNA polymerase enzymes

The study of formal language operations inspired by enzymatic actions on DNA is part of ongoing efforts to provide a formal framework and rigorous treatment of DNA-based information and DNA-based computation. Other studies along these lines include theoretical explorations of splicing systems, insertion-deletion systems, substitution, hairpin extension, hairpin reduction, superposition, overlapping concatenation, conditional concatenation, contextual intra- and intermolecular recombinations, as well as template-guided recombination. First, a formal language operation is proposed and investigated, inspired by the naturally occurring phenomenon of DNA primer extension by a DNA-template-directed DNA polymerase enzyme. Given two DNA strings u and v, where the shorter string v (called the primer) is Watson-Crick complementary and can thus bind to a substring of the longer string u (called the template) the result of the primer extension is a DNA string that is complementary to a suffix of the template which starts at the binding position of the primer. The operation of DNA primer extension can be abstracted as a binary operation on two formal languages: a template language L1 and a primer language L2. This language operation is called L1-directed extension of L2 and the closure properties of various language classes, including the classes in the Chomsky hierarchy, are studied under directed extension. Furthermore, the question of finding necessary and sufficient conditions for a given language of target strings to be generated from a given template language when the primer language is unknown is answered. The canonic inverse of directed extension is used in order to obtain the optimal solution (the minimal primer language) to this question. The second research project investigates properties of the binary string and language operation overlap assembly as defined by Csuhaj-Varju, Petre and Vaszil as a formal model of the linear self-assembly of DNA strands: The overlap assembly of two strings, xy and yz, which share an overlap y, results in the string xyz. In this context, we investigate overlap assembly and its properties: closure properties of various language families under this operation, and related decision problems. A theoretical analysis of the possible use of iterated overlap assembly to generate combinatorial DNA libraries is also given. The third research project continues the exploration of the properties of the overlap assembly operation by investigating closure properties of various language classes under iterated overlap assembly, and the decidability of the completeness of a language. The problem of deciding whether a given string is terminal with respect to a language, and the problem of deciding if a given language can be generated by an overlap assembly operation of two other given languages are also investigated

Temporal Logic and Model Checking for Operator Precedence Languages

In the last decades much research effort has been devoted to extending the success of model checking from the traditional field of finite state machines and various versions of temporal logics to suitable subclasses of context-free languages and appropriate extensions of temporal logics. To the best of our knowledge such attempts only covered structured languages, i.e. languages whose structure is immediately "visible" in their sentences, such as tree-languages or visibly pushdown ones. In this paper we present a new temporal logic suitable to express and automatically verify properties of operator precedence languages. This "historical" language family has been recently proved to enjoy fundamental algebraic and logic properties that make it suitable for model checking applications yet breaking the barrier of visible-structure languages (in fact the original motivation of its inventor Floyd was just to support efficient parsing, i.e. building the "hidden syntax tree" of language sentences). We prove that our logic is at least as expressive as analogous logics defined for visible pushdown languages yet covering a much more powerful family; we design a procedure that, given a formula in our logic builds an automaton recognizing the sentences satisfying the formula, whose size is at most exponential in the length of the formula.Comment: In Proceedings GandALF 2018, arXiv:1809.0241

Tree-Structured Problems and Parallel Computation

Turing-Maschinen sind das klassische Beschreibungsmittel für Wortsprachen und werden daher auch benützt, um Komplexitätsklassen zu definieren. Dies geschieht zum Beispiel durch das Einschränken des Platz- oder Zeitaufwandes der Berechnung zur Lösung eines Problems. Für sehr niedrige Komplexität wie etwa sublineare Laufzeit, werden Schaltkreise verwendet. Schaltkreise können auf natürliche Art Komplexitäten wie etwa logarithmische Laufzeit modellieren. Ebenso können sie als eine Art paralleles Rechenmodell gesehen werden. Eine wichtige parallele Komplexitätsklasse ist NC1. Sie wird beschrieben durch Boolesche Schaltkreise logarithmischer Tiefe und beschränktem Eingangsgrad der Gatter. Eine initiale Beobachtung, die die vorliegende Arbeit motiviert, ist, dass viele schwere Probleme in NC1 eine ähnliche Struktur haben und auf ähnliche Art und Weise gelöst werden. Das Auswertungsproblem für Boolesche Formeln ist eines der repräsentativsten Probleme aus dieser Klasse: Gegeben ist hier eine aussagenlogische Formel samt Belegung für die Variablen; gefragt ist, ob sie zu wahr oder zu falsch auswertet. Dieses Problem wird in NC1 gelöst durch den Algorithmus von Buss. Auf ähnliche Art können arithmetische Formeln in #NC1 ausgewertet oder das Wortproblem für Visibly-Pushdown-Sprachen gelöst werden. Zu besagter Klasse an Problemen gehört auch Courcelles Theorem, welches Berechnungen in Baumautomaten involviert. Zu bemerken ist, dass alle angesprochenen Probleme gemeinsam haben, dass sie aus Instanzen bestehen, die baumartig sind. Formeln sind Bäume, Visibly-Pushdown-Sprachen enthalten als Wörter kodierte Bäume und Courcelles Theorem betrachtet Graphen mit beschränkter Baumweite, d.h. Graphen, die sich als Baum darstellen lassen. Insbesondere Letzteres ist ein Schema, das häufiger auftritt. Zum Beispiel gibt es NP-vollständige Graphprobleme wie das Finden von Hamilton-Kreisen, welches unter beschränkter Baumweite in P fällt. Neuere Analysen konnten diese Schranke weiter zu SAC1 verbessern, was eine parallele Komplexitätsklasse ist. Die angesprochenen Probleme kommen aus unterschiedlichen Bereichen und haben individuelle Lösungen. Hauptthese dieser Arbeit ist, dass sich diese Vielfalt vereinheitlichen lässt. Es wird ein generisches Lösungskonzept vorgestellt, welches darauf beruht, dass sich die Probleme auf ein Termevaluierungsproblem reduzieren lassen. Kernstück ist daher ein Termevaluierungsalgorithmus, der unabhängig von der Algebra, über welche der Term evaluiert werden soll, ist. Resultat ist, dass eine Vielzahl, darunter die oben angesprochenen Probleme, sich auf analoge Art lösen lassen, und dass sich ebenso leicht neue Resultate zeigen lassen. Diese Menge an Resultaten hätte sich ohne den vereinheitlichten Lösungsansatz nicht innerhalb des Rahmens einer Arbeit wie der vorliegenden zeigen lassen. Der entwickelte Lösungsansatz führt stets zu Schaltkreisfamilien polylogarithmischer Tiefe. Es wird jedoch auch die Frage behandelt, wie mächtig Schaltkreisfamilien konstanter Tiefe noch bezüglich Termevaluierung sind. Die Klasse AC0 ist hierfür ein natürlicher Kandidat; sie entspricht der Menge der Sprachen, die durch Logik erster Ordung beschreibbar sind. Um dieses Problem anzugehen, wird zunächst das Termevaluierungsproblem über endlichen Algebren betrachtet. Dieses wiederum lässt sich in das Wortproblem von Visibly-Pushdown-Sprachen einbetten. Daher handelt dieser Teil der Arbeit vornehmlich von der Beschreibbarkeit von Visibly-Pushdown-Sprachen in Logik erster Ordnung. Hierbei treten ungelöste Probleme zu Tage, welche ein Indiz dafür sind, wie schlecht die Komplexität konstanter Tiefe bisher noch verstanden ist, und das, trotz des Resultats von Furst, Saxe und Sipser, bzw. Håstads. Die bis jetzt beschrieben Inhalte sind Teil einer kontinuierlichen Entwicklung. Es gibt jedoch ein Thema in dieser Arbeit, das orthogonal dazu ist: Automaten und im speziellen Cost-Register-Automaten. Zum einen sind, wie oben angedeutet, Automaten Beispiele für Anwendungen des hier entwickelten generischen Lösungsansatzes. Zum anderen können sie selbst zur Beschreibung von Termevaluierungsproblemen dienen; so können Visibly-Pushdown-Automaten Termevaluierung über endlichen Algebren ausführen. Um über endliche Algebren hinauszugehen, benötigen die Automaten mehr Speicher. Visibly-Pushdown-Automaten haben einen Keller, der genau dafür geeignet ist, die Baumstruktur einer Eingabeformel zu verifizieren. Für nichtendliche Algebren eignet sich ein Modell, welches hier vorgestellt werden soll. Es kombiniert Visibly-Pushdown-Automaten mit Cost-Register-Automaten. Ein Cost-Register-Automat ist ein endlicher Automat, welcher mit zusätzlichen Registern ausgestattet ist. Die Register können Werte einer Algebra speichern und werden in jedem Schritt in Abhängigkeit des Eingabezeichens und des Zustandes aktualisiert. Dieser Einwegdatenfluss von Zuständen zu Registern sorgt dafür, dass dieses Modell nicht nur entscheidbar bleibt, sondern, in Abhängigkeit der Algebra, auch niedrige Komplexität hat. Das neue Modell der Cost-Register-Visibly-Pushdown-Automaten kann nun Terme evaluieren. Es werden grundlegende Eigenschaften gezeigt, einschließlich Komplexitätsaussagen

A Model Checker for Operator Precedence Languages

The problem of extending model checking from finite state machines to procedural programs has fostered much research toward the definition of temporal logics for reasoning on context-free structures. The most notable of such results are temporal logics on Nested Words, such as CaRet and NWTL. Recently, Precedence Oriented Temporal Logic (POTL) has been introduced to specify and prove properties of programs coded trough an Operator Precedence Language (OPL). POTL is complete w.r.t. the FO restriction of the MSO logic previously defined as a logic fully equivalent to OPL. POTL increases NWTL's expressive power in a perfectly parallel way as OPLs are more powerful that nested words.In this article, we produce a model checker, named POMC, for OPL programs to prove properties expressed in POTL. To the best of our knowledge, POMC is the first implemented and openly available model checker for proving tree-structured properties of recursive procedural programs. We also report on the experimental evaluation we performed on POMC on a nontrivial benchmark

Phrase parsers from multi-axiom grammars

AbstractMulti-axiom grammars (MAG) are alternatives to single-axiom context free grammars (CFG) and all-axiom algebraic grammars (AG) for programming language specification. Neither phrase recognition nor algebraic mechanisms for language processing are supported by CFGs. AGs support algebraic mechanisms for language processing but specify a smaller class of languages. MAGs avoid these limitations. This paper describes a new parsing algorithm developed on this basis which recognizes any phrase in the language. Moreover, it does so by distributing the parsing task among a collection of smaller parsers which handle well-defined layers of the language in a piping manner. These language-layers are determined by the algebraic properties of the MAGs and are described in the paper. Basic definitions are given for multi-axiom grammar and language as well as for algebraic notions of subgrammar, primitive subgrammar, quotient grammar, and grammar/language layer. Algorithms are described to stratify a programming language into a hierarchy of layers, to construct parsers for each layer analogous to LR construction, and to accomplish the overall task of multi-layered parsing in pipeline fashion based on a tokenization which occurs between the language layers. This pipeline parallel process is a model for high speed, left-to-right language translation