Optical fluid and biomolecule transport with thermal fields

A long standing goal is the direct optical control of biomolecules and water for applications ranging from microfluidics over biomolecule detection to non-equilibrium biophysics. Thermal forces originating from optically applied, dynamic microscale temperature gradients have shown to possess great potential to reach this goal. It was demonstrated that laser heating by a few Kelvin can generate and guide water flow on the micrometre scale in bulk fluid, gel matrices or ice without requiring any lithographic structuring. Biomolecules on the other hand can be transported by thermal gradients, a mechanism termed thermophoresis, thermal diffusion or Soret effect. This molecule transport is the subject of current research, however it can be used to both characterize biomolecules and to record binding curves of important biological binding reactions, even in their native matrix of blood serum. Interestingly, thermophoresis can be easily combined with the optothermal fluid control. As a result, molecule traps can be created in a variety of geometries, enabling the trapping of small biomolecules, like for example very short DNA molecules. The combination with DNA replication from thermal convection allows us to approach molecular evolution with concurrent replication and selection processes inside a single chamber: replication is driven by thermal convection and selection by the concurrent accumulation of the DNA molecules. From the short but intense history of applying thermal fields to control fluid flow and biological molecules, we infer that many unexpected and highly synergistic effects and applications are likely to be explored in the future

Efficient Resolution of Anisotropic Structures

We highlight some recent new delevelopments concerning the sparse representation of possibly high-dimensional functions exhibiting strong anisotropic features and low regularity in isotropic Sobolev or Besov scales. Specifically, we focus on the solution of transport equations which exhibit propagation of singularities where, additionally, high-dimensionality enters when the convection field, and hence the solutions, depend on parameters varying over some compact set. Important constituents of our approach are directionally adaptive discretization concepts motivated by compactly supported shearlet systems, and well-conditioned stable variational formulations that support trial spaces with anisotropic refinements with arbitrary directionalities. We prove that they provide tight error-residual relations which are used to contrive rigorously founded adaptive refinement schemes which converge in $L_2$. Moreover, in the context of parameter dependent problems we discuss two approaches serving different purposes and working under different regularity assumptions. For frequent query problems, making essential use of the novel well-conditioned variational formulations, a new Reduced Basis Method is outlined which exhibits a certain rate-optimal performance for indefinite, unsymmetric or singularly perturbed problems. For the radiative transfer problem with scattering a sparse tensor method is presented which mitigates or even overcomes the curse of dimensionality under suitable (so far still isotropic) regularity assumptions. Numerical examples for both methods illustrate the theoretical findings

Multi-Dimensional Explorations in Supernova Theory

In this paper, we bring together various of our published and unpublished findings from our recent 2D multi-group, flux-limited radiation hydrodynamic simulations of the collapse and explosion of the cores of massive stars. Aided by 2D and 3D graphical renditions, we motivate the acoustic mechanism of core-collapse supernova explosions and explain, as best we currently can, the phases and phenomena that attend this mechanism. Two major foci of our presentation are the outer shock instability and the inner core g-mode oscillations. The former sets the stage for the latter, which damp by the generation of sound. This sound propagates outward to energize the explosion and is relevant only if the core has not exploded earlier by some other means. Hence, it is a more delayed mechanism than the traditional neutrino mechanism that has been studied for the last twenty years since it was championed by Bethe and Wilson. We discuss protoneutron star convection, accretion-induced-collapse, gravitational wave emissions, pulsar kicks, the angular anisotropy of the neutrino emissions, a subset of numerical issues, and a new code we are designing that should supercede our current supernova code VULCAN/2D. Whatever ideas last from this current generation of numerical results, and whatever the eventual mechanism(s), we conclude that the breaking of spherical symmetry will survive as one of the crucial keys to the supernova puzzle.Comment: To be published in the "Centennial Festschrift for Hans Bethe," Physics Reports (Elsevier: Holland), ed. G.E. Brown, E. van den Heuvel, and V. Kalogera, 200

Finite element computation of magnetohydrodynamic nanofluid convection from an oscillating inclined plate with radiative flux, heat source and variable temperature effects

The present work describes finite element computations for radiative magnetohydrodynamic convective Newtonian nanofluid flow from an oscillating inclined porous plate with variable temperature. Heat source/sink and buoyancy effects are included in the mathematical model. The problem is formulated by employing Tiwari-Das nanofluid model and two water - based nanofluids with spherical shaped metal nano particles as copper and alumina are considered. The Brinkman and Maxwell-Garnetts models are used for the dynamic viscosity and effective thermal conductivity of the nanofluids respectively. An algebraic flux model, the Rosseland diffusion approximation is adopted to simulate thermal radiative flux effects. The dimensionless, coupled governing partial differential equations are numerically solved via the finite element method with weak variational formulation by imposing initial and boundary conditions with a weighted residual scheme. A grid independence study is also conducted. The finite element solutions are reduced to known previous solutions in some limiting cases of the present investigation and are found to be in good agreement with published work. This investigation is relevant to electromagnetic nanomaterial manufacturing processes operating at high temperatures where radiation heat transfer is significant

Oscillatory dissipative conjugate heat and mass transfer in chemically-reacting micropolar flow with wall couple stress : a finite element numerical study

High temperature non-Newtonian materials processing provides a stimulating area for process engineering simulation. Motivated by emerging applications in this area, the present article investigates the time-dependent free convective flow of a chemically-reacting micropolar fluid from a vertical plate oscillating in its own plane adjacent to a porous medium. Thermal radiative, viscous dissipation and wall couple stress effects are included. The Rosseland diffusion approximation is used to model uni-directional radiative heat flux in the energy equation. Darcy’s model is adopted to mimic porous medium drag force effects. The governing two-dimensional conservation equations are normalized with appropriate variables and transformed into a dimensionless, coupled, nonlinear system of partial differential equations under the assumption of low Reynolds number. The governing boundary value problem is then solved under physically viable boundary conditions numerically with a finite element method based on the weighted residual approach. Graphical illustrations for velocity, micro-rotation (angular velocity), temperature and concentration are obtained as functions of the emerging physical parameters i.e. thermal radiation, viscous dissipation, first order chemical reaction parameter etc. Furthermore, friction factor (skin friction), surface heat transfer and mass transfer rates have been tabulated quantitatively for selected thermo-physical parameters. A comparison with previously published paper is made to check the validity and accuracy of the present finite element solutions under some limiting cases and excellent agreement is attained. Additionally, a mesh independence study is conducted. The model is relevant to reactive polymeric materials processing simulation

Finite element analysis of rotating oscillatory magneto-convective radiative micropolar thermo-solutal flow

Micropolar fluids provide an alternative mechanism for simulating micro-scale and molecular fluid mechanics which require less computational effort. In the present paper, a numerical analysis is conducted for the primary and secondary flow characterizing dissipative micropolar convective heat and mass transfer from a rotating vertical plate with oscillatory plate velocity, adjacent to a permeable medium. Owing to high temperature, thermal radiation effects are also studied. The micropolar fluid is also chemically-reacting, both thermal and species (concentration) buoyancy effects and heat source/sink are included. The entire system rotates with uniform angular velocity about an axis normal to the plate. Rosseland’s diffusion approximation is used to describe the radiative heat flux in the energy equation. The partial differential equations governing the flow problem are rendered dimensionless with appropriate transformation variables. A Galerkin finite element method is employed to solve the emerging multi-physical components of fluid dynamics problem are examined for a variety of parameters including rotation parameter, radiation-conduction parameter, micropolar coupling parameter, Eckert number (dissipation), reaction parameter, magnetic body force parameter and Schmidt number. A comparison with previously published article is made to check the validity and accuracy of the present finite element solutions under some limiting case and excellent agreement is attained. The current simulations may be applicable to various chemical engineering systems, oscillating rheometry, and rotating MHD energy generator near-wall flows

The use of openfoam as a virtual laboratory to simulate oscillating water column wave energy converters

The Oscillating Water Column is one of the oldest concepts for wave energy harvesting. T e device optimization is still a crucial point for the commercial-scale diffusion of this technology. Therefore, research at fundamental level is still required. The implementation and the application a CFD code for the conduction of a parameter study aiming at the optimization of the device is presented. The numerical set up and the validation of a virtual wave flume in the open-source environment OpenFOAM® are initially presented, using comparatively different wave generation approaches. The application of the model to simulate the device and a validation with physical results are shown. The model solves incompressible 3D Navier-Stokes equations for a single Eulerian fluid mixture of water and air, using a Finite Volume Method for equations discretization and the Volume Of Fluid method for free surface tracking. Different turbulence models are tested, comparing their suitability for this particular application both in terms of computational cost and model capability to reproduce the experimental data

Investigation of supersonic chemically reacting and radiating channel flow

The 2-D time-dependent Navier-Stokes equations are used to investigate supersonic flows undergoing finite rate chemical reaction and radiation interaction for a hydrogen-air system. The explicit multistage finite volume technique of Jameson is used to advance the governing equations in time until convergence is achieved. The chemistry source term in the species equation is treated implicitly to alleviate the stiffness associated with fast reactions. The multidimensional radiative transfer equations for a nongray model are provided for a general configuration and then reduced for a planar geometry. Both pseudo-gray and nongray models are used to represent the absorption-emission characteristics of the participating species. The supersonic inviscid and viscous, nonreacting flows are solved by employing the finite volume technique of Jameson and the unsplit finite difference scheme of MacCormack. The specified problem considered is of the flow in a channel with a 10 deg compression-expansion ramp. The calculated results are compared with those of an upwind scheme. The problem of chemically reacting and radiating flows are solved for the flow of premixed hydrogen-air through a channel with parallel boundaries, and a channel with a compression corner. Results obtained for specific conditions indicate that the radiative interaction can have a significant influence on the entire flow field

Rotating unsteady multi-physico-chemical magneto-micropolar transport in porous media : Galerkin finite element study

In this paper, a mathematical model is developed for magnetohydrodynamic (MHD), incompressible, dissipative and chemically reacting micropolar fluid flow, heat and mass transfer through a porous medium from a vertical plate with Hall current, Soret and Dufour effects. The entire system rotates with uniform angular velocity about an axis normal to the plate. Rosseland’s diffusion approximation is used to describe the radiative heat flux in the energy equation. The governing partial differential equations for momentum, heat, angular momentum and species conservation are transformed into dimensionless form under the assumption of low Reynolds number with appropriate dimensionless quantities. The emerging boundary value problem is then solved numerically with a Galerkin finite element method employing the weighted residual approach. The evolution of translational velocity, micro-rotation (angular velocity), temperature and concentration are studied in detail. The influence of many multi-physical parameters in these variables is illustrated graphically. Finally, the friction factor, surface heat transfer and mass transfer rate dependency on the emerging thermo-physical parameters are also tabulated. The finite element code is benchmarked with the results reported in the literature to check the validity and accuracy under some limiting cases and an excellent agreement with published solutions is achieved. The study is relevant to rotating MHD energy generators utilizing non-Newtonian working fluids and also magnetic rheo-dynamic materials processing systems