BFO and DOLCE: So Far, So Close…

A survey of the similarities and differences between BFO and DOLCE, and of the mutual interactions between Nicola Guarino and Barry Smit

Ontology, Ontologies and the "I" of FAIR

According to the FAIR guiding principles, one of the central attributes for maximizing the added value of information artifacts is interoperability. In this paper, I discuss the importance, and propose a characterization of the notion of Semantic Interoperability. Moreover, I show that a direct consequence of this view is that Semantic Interoperability cannot be achieved without the support of, on one hand, (i) ontologies, as meaning contracts capturing the conceptualizations represented in information artifacts and, on the other hand, of (ii) Ontology, as a discipline proposing formal meth- ods and theories for clarifying these conceptualizations and articulating their representations. In particular, I discuss the fundamental role of formal ontological theories (in the latter sense) to properly ground the construction of representation languages, as well as methodological and computational tools for supporting the engineering of ontologies (in the former sense) in the context of FAIR

Barry Smith an sich

Festschrift in Honor of Barry Smith on the occasion of his 65th Birthday. Published as issue 4:4 of the journal Cosmos + Taxis: Studies in Emergent Order and Organization. Includes contributions by Wolfgang Grassl, Nicola Guarino, John T. Kearns, Rudolf Lüthe, Luc Schneider, Peter Simons, Wojciech Żełaniec, and Jan Woleński

A pattern-based approach to a cell tracking ontology

Time-lapse microscopy has thoroughly transformed our understanding of biological motion and developmental dynamics from single cells to entire organisms. The increasing amount of cell tracking data demands the creation of tools to make extracted data searchable and interoperable between experiment and data types. In order to address that problem, the current paper reports on the progress in building the Cell Tracking Ontology (CTO): An ontology framework for describing, querying and integrating data from complementary experimental techniques in the domain of cell tracking experiments. CTO is based on a basic knowledge structure: the cellular genealogy serving as a backbone model to integrate specific biological ontologies into tracking data. As a first step we integrate the Phenotype and Trait Ontology (PATO) as one of the most relevant ontologies to annotate cell tracking experiments. The CTO requires both the integration of data on various levels of generality as well as the proper structuring of collected information. Therefore, in order to provide a sound foundation of the ontology, we have built on the rich body of work on top-level ontologies and established three generic ontology design patterns addressing three modeling challenges for properly representing cellular genealogies, i.e. representing entities existing in time, undergoing changes over time and their organization into more complex structures such as situations

Two Approaches to the Identity of Processes in BFO

This paper aims to explore processes and their identity with a focus on the upper ontology Basic Formal Ontology (BFO). We begin with a classification based on two basic classes of changes of independent continuants: changes with respect to a single specifically dependent continuant thereof or with respect to the spatial region that its parts occupy. We accordingly distinguish two kinds of simple processes: specifically dependent continuant changes and spatial changes. Next, we investigate a compositional approach to the identity of processes: the identity of any process is determined by the identity of the simple processes that compose them. Then, we consider a causal approach to the identity of processes with recourse to a dispositional view of processes according to which any process is a realization of some disposition. We also examine assumptions on which these two approaches to the identity of processes are based

A Computational-Hermeneutic Approach for Conceptual Explicitation

We present a computer-supported approach for the logical analysis and conceptual explicitation of argumentative discourse. Computational hermeneutics harnesses recent progresses in automated reasoning for higher-order logics and aims at formalizing natural-language argumentative discourse using flexible combinations of expressive non-classical logics. In doing so, it allows us to render explicit the tacit conceptualizations implicit in argumentative discursive practices. Our approach operates on networks of structured arguments and is iterative and two-layered. At one layer we search for logically correct formalizations for each of the individual arguments. At the next layer we select among those correct formalizations the ones which honor the argument's dialectic role, i.e. attacking or supporting other arguments as intended. We operate at these two layers in parallel and continuously rate sentences' formalizations by using, primarily, inferential adequacy criteria. An interpretive, logical theory will thus gradually evolve. This theory is composed of meaning postulates serving as explications for concepts playing a role in the analyzed arguments. Such a recursive, iterative approach to interpretation does justice to the inherent circularity of understanding: the whole is understood compositionally on the basis of its parts, while each part is understood only in the context of the whole (hermeneutic circle). We summarily discuss previous work on exemplary applications of human-in-the-loop computational hermeneutics in metaphysical discourse. We also discuss some of the main challenges involved in fully-automating our approach. By sketching some design ideas and reviewing relevant technologies, we argue for the technological feasibility of a highly-automated computational hermeneutics.Comment: 29 pages, 9 figures, to appear in A. Nepomuceno, L. Magnani, F. Salguero, C. Bar\'es, M. Fontaine (eds.), Model-Based Reasoning in Science and Technology. Inferential Models for Logic, Language, Cognition and Computation, Series "Sapere", Springe

An Analysis of the Notion of Need for the Representation of Public Services

Many Public Administrations structure their services around the notion of users’ need. However, there is a gap between private, subjectively perceived needs (self-attributed) and needs that are attributed by PA to citizens (heteroattributed). Because of the gap, citizens’ needs are often only partially satisfied by PAs services. This gap is in part due to the fact that the meaning of the word “need” is ambiguous and full of antinomic nuances. The purpose of this paper is to formulate a definition of “need” suitable for citizens’ needs management with respect to PA’s services offering, and to provide an accurate ontological analysis of the notion of “need” and the network of concepts that relate to it

Attitudinal Objects

This paper defends the view that attitudinal objects such as claims, beliefs, judgments, and requests form an ontological category of its own sharply distinguished from that of events and states and that of propositions. Attitudinal objects play a central role in attitude reports and avoid the conceptual and empirical problems for propositions. Unlike the latter, attitudinal objects bear a particular connection to normativity. The paper will also discuss the syntactic basis of a semantics of attitude reports based on attitudinal objects

A plea for epistemic ontologies

In this article, we advocate the use of “epistemic” ontologies, i.e. systems of categories representing our knowledge of the world, rather than the world directly. We first expose a metaphysical framework based on a dual mental and physical realism, which underpins the development of these epistemic ontologies. To this end, we refer to the theories of intentionality and representation established within the school of Franz Brentano at the turn of the 20th century and choose to rehabilitate the notion of a ‘representation object’, as theorized by Kasimir Twardowski. We therefore propose that the categories of epistemic ontologies correspond to ‘general representation objects’. Secondly, we apply these proposals to the treatment of technical artefacts, material qualities of objects and events (notably as a continuation of our previous work on events). This leads us to sketch out a foundational epistemic ontology

Investigating business process elements: a journey from the field of Business Process Management to ontological analysis, and back

Business process modelling languages (BPMLs) typically enable the representation of business processes via the creation of process models, which are constructed using the elements and graphical symbols of the BPML itself. Despite the wide literature on business process modelling languages, on the comparison between graphical components of different languages, on the development and enrichment of new and existing notations, and the numerous definitions of what a business process is, the BPM community still lacks a robust (ontological) characterisation of the elements involved in business process models and, even more importantly, of the very notion of business process. While some efforts have been done towards this direction, the majority of works in this area focuses on the analysis of the behavioural (control flow) aspects of process models only, thus neglecting other central modelling elements, such as those denoting process participants (e.g., data objects, actors), relationships among activities, goals, values, and so on. The overall purpose of this PhD thesis is to provide a systematic study of the elements that constitute a business process, based on ontological analysis, and to apply these results back to the Business Process Management field. The major contributions that were achieved in pursuing our overall purpose are: (i) a first comprehensive and systematic investigation of what constitutes a business process meta-model in literature, and a definition of what we call a literature-based business process meta-model starting from the different business process meta-models proposed in the literature; (ii) the ontological analysis of four business process elements (event, participant, relationship among activities, and goal), which were identified as missing or problematic in the literature and in the literature-based meta-model; (iii) the revision of the literature-based business process meta-model that incorporates the analysis of the four investigated business process elements - event, participant, relationship among activities and goal; and (iv) the definition and evaluation of a notation that enriches the relationships between activities by including the notions of occurrence dependences and rationales