A Priority-based Fair Queuing (PFQ) Model for Wireless Healthcare System

Healthcare is a very active research area, primarily due to the increase in the elderly population that leads to increasing number of emergency situations that require urgent actions. In recent years some of wireless networked medical devices were equipped with different sensors to measure and report on vital signs of patient remotely. The most important sensors are Heart Beat Rate (ECG), Pressure and Glucose sensors. However, the strict requirements and real-time nature of medical applications dictate the extreme importance and need for appropriate Quality of Service (QoS), fast and accurate delivery of a patient’s measurements in reliable e-Health ecosystem. As the elderly age and older adult population is increasing (65 years and above) due to the advancement in medicine and medical care in the last two decades; high QoS and reliable e-health ecosystem has become a major challenge in Healthcare especially for patients who require continuous monitoring and attention. Nevertheless, predictions have indicated that elderly population will be approximately 2 billion in developing countries by 2050 where availability of medical staff shall be unable to cope with this growth and emergency cases that need immediate intervention. On the other side, limitations in communication networks capacity, congestions and the humongous increase of devices, applications and IOT using the available communication networks add extra layer of challenges on E-health ecosystem such as time constraints, quality of measurements and signals reaching healthcare centres. Hence this research has tackled the delay and jitter parameters in E-health M2M wireless communication and succeeded in reducing them in comparison to current available models. The novelty of this research has succeeded in developing a new Priority Queuing model ‘’Priority Based-Fair Queuing’’ (PFQ) where a new priority level and concept of ‘’Patient’s Health Record’’ (PHR) has been developed and integrated with the Priority Parameters (PP) values of each sensor to add a second level of priority. The results and data analysis performed on the PFQ model under different scenarios simulating real M2M E-health environment have revealed that the PFQ has outperformed the results obtained from simulating the widely used current models such as First in First Out (FIFO) and Weight Fair Queuing (WFQ). PFQ model has improved transmission of ECG sensor data by decreasing delay and jitter in emergency cases by 83.32% and 75.88% respectively in comparison to FIFO and 46.65% and 60.13% with respect to WFQ model. Similarly, in pressure sensor the improvements were 82.41% and 71.5% and 68.43% and 73.36% in comparison to FIFO and WFQ respectively. Data transmission were also improved in the Glucose sensor by 80.85% and 64.7% and 92.1% and 83.17% in comparison to FIFO and WFQ respectively. However, non-emergency cases data transmission using PFQ model was negatively impacted and scored higher rates than FIFO and WFQ since PFQ tends to give higher priority to emergency cases. Thus, a derivative from the PFQ model has been developed to create a new version namely “Priority Based-Fair Queuing-Tolerated Delay” (PFQ-TD) to balance the data transmission between emergency and non-emergency cases where tolerated delay in emergency cases has been considered. PFQ-TD has succeeded in balancing fairly this issue and reducing the total average delay and jitter of emergency and non-emergency cases in all sensors and keep them within the acceptable allowable standards. PFQ-TD has improved the overall average delay and jitter in emergency and non-emergency cases among all sensors by 41% and 84% respectively in comparison to PFQ model

Fast Parallel Algorithms for Basic Problems

Parallel processing is one of the most active research areas these days. We are interested in one aspect of parallel processing, i.e. the design and analysis of parallel algorithms. Here, we focus on non-numerical parallel algorithms for basic combinatorial problems, such as data structures, selection, searching, merging and sorting. The purposes of studying these types of problems are to obtain basic building blocks which will be useful in solving complex problems, and to develop fundamental algorithmic techniques. In this thesis, we study the following problems: priority queues, multiple search and multiple selection, and reconstruction of a binary tree from its traversals. The research on priority queue was motivated by its various applications. The purpose of studying multiple search and multiple selection is to explore the relationships between four of the most fundamental problems in algorithm design, that is, selection, searching, merging and sorting; while our parallel solutions can be used as subroutines in algorithms for other problems. The research on the last problem, reconstruction of a binary tree from its traversals, was stimulated by a challenge proposed in a recent paper by Berkman et al. ( Highly Parallelizable Problems, STOC 89) to design doubly logarithmic time optimal parallel algorithms because a remarkably small number of such parallel algorithms exist

Actor-based Concurrency in Newspeak 4

Actors are a model of computation invented by Carl Hewitt in the 1970s. It has seen a resurrection of mainstream use recently as a potential solution to the latency and concurrency that are quickly rising as the dominant challenges facing the software industry. In this project I explored the history of the actor model and a practical implementation of actor-based concurrency tightly integrated with non-blocking futures in the E programming language developed by Mark Miller. I implemented an actor-based concurrency framework for Newspeak that closely follows the E implementation and includes E-style futures and deep integration into the programming language via new syntax for asynchronous message passing

Optimizing High Performance Markov Clustering for Pre-Exascale Architectures

HipMCL is a high-performance distributed memory implementation of the popular Markov Cluster Algorithm (MCL) and can cluster large-scale networks within hours using a few thousand CPU-equipped nodes. It relies on sparse matrix computations and heavily makes use of the sparse matrix-sparse matrix multiplication kernel (SpGEMM). The existing parallel algorithms in HipMCL are not scalable to Exascale architectures, both due to their communication costs dominating the runtime at large concurrencies and also due to their inability to take advantage of accelerators that are increasingly popular. In this work, we systematically remove scalability and performance bottlenecks of HipMCL. We enable GPUs by performing the expensive expansion phase of the MCL algorithm on GPU. We propose a CPU-GPU joint distributed SpGEMM algorithm called pipelined Sparse SUMMA and integrate a probabilistic memory requirement estimator that is fast and accurate. We develop a new merging algorithm for the incremental processing of partial results produced by the GPUs, which improves the overlap efficiency and the peak memory usage. We also integrate a recent and faster algorithm for performing SpGEMM on CPUs. We validate our new algorithms and optimizations with extensive evaluations. With the enabling of the GPUs and integration of new algorithms, HipMCL is up to 12.4x faster, being able to cluster a network with 70 million proteins and 68 billion connections just under 15 minutes using 1024 nodes of ORNL's Summit supercomputer

Evolving NoSQL Databases Without Downtime

NoSQL databases like Redis, Cassandra, and MongoDB are increasingly popular because they are flexible, lightweight, and easy to work with. Applications that use these databases will evolve over time, sometimes necessitating (or preferring) a change to the format or organization of the data. The problem we address in this paper is: How can we support the evolution of high-availability applications and their NoSQL data online, without excessive delays or interruptions, even in the presence of backward-incompatible data format changes? We present KVolve, an extension to the popular Redis NoSQL database, as a solution to this problem. KVolve permits a developer to submit an upgrade specification that defines how to transform existing data to the newest version. This transformation is applied lazily as applications interact with the database, thus avoiding long pause times. We demonstrate that KVolve is expressive enough to support substantial practical updates, including format changes to RedisFS, a Redis-backed file system, while imposing essentially no overhead in general use and minimal pause times during updates.Comment: Update to writing/structur