Monitoring-Oriented Programming: A Tool-Supported Methodology for Higher Quality Object-Oriented Software

This paper presents a tool-supported methodological paradigm for object-oriented software development, called monitoring-oriented programming and abbreviated MOP, in which runtime monitoring is a basic software design principle. The general idea underlying MOP is that software developers insert specifications in their code via annotations. Actual monitoring code is automatically synthesized from these annotations before compilation and integrated at appropriate places in the program, according to user-defined configuration attributes. This way, the specification is checked at runtime against the implementation. Moreover, violations and/or validations of specifications can trigger user-defined code at any points in the program, in particular recovery code, outputting or sending messages, or raising exceptions. The MOP paradigm does not promote or enforce any specific formalism to specify requirements: it allows the users to plug-in their favorite or domain-specific specification formalisms via logic plug-in modules. There are two major technical challenges that MOP supporting tools unavoidably face: monitor synthesis and monitor integration. The former is heavily dependent on the specification formalism and comes as part of the corresponding logic plug-in, while the latter is uniform for all specification formalisms and depends only on the target programming language. An experimental prototype tool, called Java-MOP, is also discussed, which currently supports most but not all of the desired MOP features. MOP aims at reducing the gap between formal specification and implementation, by integrating the two and allowing them together to form a system

(E-book) Patron Driven Acquisitions (PDA): An Annotated Bibliography

Patron Driven Acquisitions (PDA), also known as Demand Driven Acquisitions (DDA) and Purchase on Demand (POD), has been used by libraries since the early 1990’s. PDA allows libraries to acquire items based on the immediate needs of their patrons, often without library intervention. With the arrival of e-books in the late 1990’s, libraries soon began including them in their PDA workflows. PDA is controversial for several reasons, and PDA of E-books adds further issues to the debate. This bibliography covers PDA and the issues academic libraries face when devising a PDA program. Articles outline the benefits and problems of print and E-book PDA and the debate they elicit. They also document the response of libraries to address these problems. Only peer-reviewed articles that express current thought on the subject (as of this writing) have been used

Authorised Translations of Electronic Documents

A concept is proposed to extend authorised translations of documents to electronically signed, digital documents. Central element of the solution is an electronic seal, embodied as an XML data structure, which attests to the correctness of the translation and the authorisation of the translator. The seal contains a digital signature binding together original and translated document, thus enabling forensic inspection and therefore legal security in the appropriation of the translation. Organisational aspects of possible implementation variants of electronic authorised translations are discussed and a realisation as a stand-alone web-service is presented.Comment: In: Peer-reviewed Proceedings of the Information Security South Africa (ISSA) 2006 From Insight to Foresight Conference, 5 to 7 July 2006, Sandton, South Afric

(E-book) Patron Driven Acquisitions (PDA): An Annotated Bibliography

Patron Driven Acquisitions (PDA), also known as Demand Driven Acquisitions (DDA) and Purchase on Demand (POD), has been used by libraries since the early 1990’s. PDA allows libraries to acquire items based on the immediate needs of their patrons, often without library intervention. With the arrival of e-books in the late 1990’s, libraries soon began including them in their PDA workflows. PDA is controversial for several reasons, and PDA of E-books adds further issues to the debate. This bibliography covers PDA and the issues academic libraries face when devising a PDA program. Articles outline the benefits and problems of print and E-book PDA and the debate they elicit. They also document the response of libraries to address these problems. Only peer-reviewed articles that express current thought on the subject (as of this writing) have been used

DoctorEye: A clinically driven multifunctional platform, for accurate processing of tumors in medical images

Copyright @ Skounakis et al.This paper presents a novel, open access interactive platform for 3D medical image analysis, simulation and visualization, focusing in oncology images. The platform was developed through constant interaction and feedback from expert clinicians integrating a thorough analysis of their requirements while having an ultimate goal of assisting in accurately delineating tumors. It allows clinicians not only to work with a large number of 3D tomographic datasets but also to efficiently annotate multiple regions of interest in the same session. Manual and semi-automatic segmentation techniques combined with integrated correction tools assist in the quick and refined delineation of tumors while different users can add different components related to oncology such as tumor growth and simulation algorithms for improving therapy planning. The platform has been tested by different users and over large number of heterogeneous tomographic datasets to ensure stability, usability, extensibility and robustness with promising results. AVAILABILITY: THE PLATFORM, A MANUAL AND TUTORIAL VIDEOS ARE AVAILABLE AT: http://biomodeling.ics.forth.gr. It is free to use under the GNU General Public License

Dissertation by portfolio : an alternative to the traditional thesis

Both the absolute numbers and proportion of international students in the student cohorts of postgradute computing and engineering courses rose dramatically between 2005 and 2009. One of the hardest tasks these students have to perform is the production of a dissertation in English. This paper will concentrate on experiences with students studying computing masters level courses. This paper asks the question whether we are assessing a student's skills with academic English or their ability to meet the learning outcomes of the dissertation module. It will present an alternative to the traditional written dissertation in the form of a portfolio model which is applicable in highly technical research projects. The lessons learned from a pilot project which introduced portfolio dissertations to the Department of Computing at Sheffield Hallam University will be presented along with plans for the next stage of implementation

Anveshak - A Groundtruth Generation Tool for Foreground Regions of Document Images

We propose a graphical user interface based groundtruth generation tool in this paper. Here, annotation of an input document image is done based on the foreground pixels. Foreground pixels are grouped together with user interaction to form labeling units. These units are then labeled by the user with the user defined labels. The output produced by the tool is an image with an XML file containing its metadata information. This annotated data can be further used in different applications of document image analysis.Comment: Accepted in DAR 201

National Mesothelioma Virtual Bank: A standard based biospecimen and clinical data resource to enhance translational research

Background: Advances in translational research have led to the need for well characterized biospecimens for research. The National Mesothelioma Virtual Bank is an initiative which collects annotated datasets relevant to human mesothelioma to develop an enterprising biospecimen resource to fulfill researchers' need. Methods: The National Mesothelioma Virtual Bank architecture is based on three major components: (a) common data elements (based on College of American Pathologists protocol and National North American Association of Central Cancer Registries standards), (b) clinical and epidemiologic data annotation, and (c) data query tools. These tools work interoperably to standardize the entire process of annotation. The National Mesothelioma Virtual Bank tool is based upon the caTISSUE Clinical Annotation Engine, developed by the University of Pittsburgh in cooperation with the Cancer Biomedical Informatics Grid™ (caBIG™, see http://cabig.nci.nih.gov). This application provides a web-based system for annotating, importing and searching mesothelioma cases. The underlying information model is constructed utilizing Unified Modeling Language class diagrams, hierarchical relationships and Enterprise Architect software. Result: The database provides researchers real-time access to richly annotated specimens and integral information related to mesothelioma. The data disclosed is tightly regulated depending upon users' authorization and depending on the participating institute that is amenable to the local Institutional Review Board and regulation committee reviews. Conclusion: The National Mesothelioma Virtual Bank currently has over 600 annotated cases available for researchers that include paraffin embedded tissues, tissue microarrays, serum and genomic DNA. The National Mesothelioma Virtual Bank is a virtual biospecimen registry with robust translational biomedical informatics support to facilitate basic science, clinical, and translational research. Furthermore, it protects patient privacy by disclosing only de-identified datasets to assure that biospecimens can be made accessible to researchers. © 2008 Amin et al; licensee BioMed Central Ltd

A story environment for learning object annotation and collection : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Computer Science at Massey University, Palmerston North, New Zealand

With the increase in computer power, network bandwidth and availability, e-learning is used more and more widely. In practice e-learning can be applied in a variety of ways, such as providing electronic resources to support teaching and learning, developing computer based tutoring programs or building computer supported collaborative learning environments. Nowadays e-learning becomes significantly important because it can improve the quality of learning through using interactive computers, online communications and information systems in ways that other teaching methods cannot achieve. The important advantage of e-learning is that it offers learners a large amount of sharable and reusable learning resources. The current approaches such as Internet search and learning object repository does not effectively help users to search for appropriate learning objects. The original story concept introduces a new semantic layer between collections of learning objects and learning material. The basic idea of the story concept is to add an interpretative, semantically rich layer, informally called 'Story' between learning objects and learning material that links learning objects according to specific themes and subjects (Heinrich & Andres, 2003a). One motivation behind this approach is to put a more focused, semantic layer on top of untargeted metadata that are commonly used to describe a single learning object. Speaking from an e-learning context the stories build on learning objects and become information resources for learning material. The overall aim of this project was to design and build a story environment to realize the above story concept. The development of the story environment includes story metadata, story environment components, the story browsing and authoring processes, and tools involved in story browsing and authoring. The story concept suggests different types of metadata should be used in a story. This project developed those different metadata specifications to support story environment. Two prototypes of tools have been designed and implemented in this project to allow users to evaluate the story concept and story environment. The story browser helps story readers to read the story narrative and look at a story from different perspectives. The story authoring tool is used by the story authors to author a story. The future work of this project has been identified in the area of adding features of current tools, user testing and further implementation of the story environment