Exploring Application Performance on Emerging Hybrid-Memory Supercomputers

Next-generation supercomputers will feature more hierarchical and heterogeneous memory systems with different memory technologies working side-by-side. A critical question is whether at large scale existing HPC applications and emerging data-analytics workloads will have performance improvement or degradation on these systems. We propose a systematic and fair methodology to identify the trend of application performance on emerging hybrid-memory systems. We model the memory system of next-generation supercomputers as a combination of "fast" and "slow" memories. We then analyze performance and dynamic execution characteristics of a variety of workloads, from traditional scientific applications to emerging data analytics to compare traditional and hybrid-memory systems. Our results show that data analytics applications can clearly benefit from the new system design, especially at large scale. Moreover, hybrid-memory systems do not penalize traditional scientific applications, which may also show performance improvement.Comment: 18th International Conference on High Performance Computing and Communications, IEEE, 201

Heterogeneous multicore systems for signal processing

This thesis explores the capabilities of heterogeneous multi-core systems, based on multiple Graphics Processing Units (GPUs) in a standard desktop framework. Multi-GPU accelerated desk side computers are an appealing alternative to other high performance computing (HPC) systems: being composed of commodity hardware components fabricated in large quantities, their price-performance ratio is unparalleled in the world of high performance computing. Essentially bringing “supercomputing to the masses”, this opens up new possibilities for application fields where investing in HPC resources had been considered unfeasible before. One of these is the field of bioelectrical imaging, a class of medical imaging technologies that occupy a low-cost niche next to million-dollar systems like functional Magnetic Resonance Imaging (fMRI). In the scope of this work, several computational challenges encountered in bioelectrical imaging are tackled with this new kind of computing resource, striving to help these methods approach their true potential. Specifically, the following main contributions were made: Firstly, a novel dual-GPU implementation of parallel triangular matrix inversion (TMI) is presented, addressing an crucial kernel in computation of multi-mesh head models of encephalographic (EEG) source localization. This includes not only a highly efficient implementation of the routine itself achieving excellent speedups versus an optimized CPU implementation, but also a novel GPU-friendly compressed storage scheme for triangular matrices. Secondly, a scalable multi-GPU solver for non-hermitian linear systems was implemented. It is integrated into a simulation environment for electrical impedance tomography (EIT) that requires frequent solution of complex systems with millions of unknowns, a task that this solution can perform within seconds. In terms of computational throughput, it outperforms not only an highly optimized multi-CPU reference, but related GPU-based work as well. Finally, a GPU-accelerated graphical EEG real-time source localization software was implemented. Thanks to acceleration, it can meet real-time requirements in unpreceeded anatomical detail running more complex localization algorithms. Additionally, a novel implementation to extract anatomical priors from static Magnetic Resonance (MR) scansions has been included

Software for Exascale Computing - SPPEXA 2016-2019

This open access book summarizes the research done and results obtained in the second funding phase of the Priority Program 1648 "Software for Exascale Computing" (SPPEXA) of the German Research Foundation (DFG) presented at the SPPEXA Symposium in Dresden during October 21-23, 2019. In that respect, it both represents a continuation of Vol. 113 in Springer’s series Lecture Notes in Computational Science and Engineering, the corresponding report of SPPEXA’s first funding phase, and provides an overview of SPPEXA’s contributions towards exascale computing in today's sumpercomputer technology. The individual chapters address one or more of the research directions (1) computational algorithms, (2) system software, (3) application software, (4) data management and exploration, (5) programming, and (6) software tools. The book has an interdisciplinary appeal: scholars from computational sub-fields in computer science, mathematics, physics, or engineering will find it of particular interest

Using GPU to Accelerate Linear Computations in Power System Applications

With the development of advanced power system controls, the industrial and research community is becoming more interested in simulating larger interconnected power grids. It is always critical to incorporate advanced computing technologies to accelerate these power system computations. Power flow, one of the most fundamental computations in power system analysis, converts the solution of non-linear systems to that of a set of linear systems via the Newton method or one of its variants. An efficient solution to these linear equations is the key to improving the performance of power flow computation, and hence to accelerating other power system applications based on power flow computation, such as optimal power flow, contingency analysis, etc. This dissertation focuses on the exploration of iterative linear solvers and applicable preconditioners, with graphic processing unit (GPU) implementations to achieve performance improvement on the linear computations in power flow computations. An iterative conjugate gradient solver with Chebyshev preconditioner is studied first, and then the preconditioner is extended to a two-step preconditioner. At last, the conjugate gradient solver and the two-step preconditioner are integrated with MATPOWER to solve the practical fast decoupled load flow (FDPF), and an inexact linear solution method is proposed to further save the runtime of FDPF. Performance improvement is reported by applying these methods and GPU-implementation. The final complete GPU-based FDPF with inexact linear solving can achieve nearly 3x performance improvement over the MATPOWER implementation for a test system with 11,624 buses. A supporting study including a quick estimation of the largest eigenvalue of the linear system which is required by the Chebyshev preconditioner is presented as well. This dissertation demonstrates the potential of using GPU with scalable methods in power flow computation

Computer Science Research Institute 2005 annual report of activities.

This report summarizes the activities of the Computer Science Research Institute (CSRI) at Sandia National Laboratories during the period January 1, 2005 to December 31, 2005. During this period, the CSRI hosted 182 visitors representing 83 universities, companies and laboratories. Of these, 60 were summer students or faculty. The CSRI partially sponsored 2 workshops and also organized and was the primary host for 3 workshops. These 3 CSRI sponsored workshops had 105 participants, 78 from universities, companies and laboratories, and 27 from Sandia. Finally, the CSRI sponsored 12 long-term collaborative research projects and 3 Sabbaticals