3,691 research outputs found
PySpike - A Python library for analyzing spike train synchrony
Understanding how the brain functions is one of the biggest challenges of our
time. The analysis of experimentally recorded neural firing patterns (spike
trains) plays a crucial role in addressing this problem. Here, the PySpike
library is introduced, a Python package for spike train analysis providing
parameter-free and time-scale independent measures of spike train synchrony. It
allows to compute similarity and dissimilarity profiles, averaged values and
distance matrices. Although mainly focusing on neuroscience, PySpike can also
be applied in other contexts like climate research or social sciences. The
package is available as Open Source on Github and PyPI.Comment: 7 pages, 6 figure
High frequency oscillations as a correlate of visual perception
“NOTICE: this is the author’s version of a work that was accepted for publication in International journal of psychophysiology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in International journal of psychophysiology , 79, 1, (2011) DOI 10.1016/j.ijpsycho.2010.07.004Peer reviewedPostprin
A guide to time-resolved and parameter-free measures of spike train synchrony
Measures of spike train synchrony have proven a valuable tool in both
experimental and computational neuroscience. Particularly useful are
time-resolved methods such as the ISI- and the SPIKE-distance, which have
already been applied in various bivariate and multivariate contexts. Recently,
SPIKE-Synchronization was proposed as another time-resolved synchronization
measure. It is based on Event-Synchronization and has a very intuitive
interpretation. Here, we present a detailed analysis of the mathematical
properties of these three synchronization measures. For example, we were able
to obtain analytic expressions for the expectation values of the ISI-distance
and SPIKE-Synchronization for Poisson spike trains. For the SPIKE-distance we
present an empirical formula deduced from numerical evaluations. These
expectation values are crucial for interpreting the synchronization of spike
trains measured in experiments or numerical simulations, as they represent the
point of reference for fully randomized spike trains.Comment: 8 pages, 4 figure
Measuring the temporal dynamics of inter-personal neural entrainment in continuous child-adult EEG hyperscanning data.
Current approaches to analysing EEG hyperscanning data in the developmental literature typically consider interpersonal entrainment between interacting physiological systems as a time-invariant property. This approach obscures crucial information about how entrainment between interacting systems is established and maintained over time. Here, we describe methods, and present computational algorithms, that will allow researchers to address this gap in the literature. We focus on how two different approaches to measuring entrainment, namely concurrent (e.g., power correlations, phase locking) and sequential (e.g., Granger causality) measures, can be applied to three aspects of the brain signal: amplitude, power, and phase. We guide the reader through worked examples using simulated data on how to leverage these methods to measure changes in interbrain entrainment. For each, we aim to provide a detailed explanation of the interpretation and application of these analyses when studying neural entrainment during early social interactions
Collective stability of networks of winner-take-all circuits
The neocortex has a remarkably uniform neuronal organization, suggesting that
common principles of processing are employed throughout its extent. In
particular, the patterns of connectivity observed in the superficial layers of
the visual cortex are consistent with the recurrent excitation and inhibitory
feedback required for cooperative-competitive circuits such as the soft
winner-take-all (WTA). WTA circuits offer interesting computational properties
such as selective amplification, signal restoration, and decision making. But,
these properties depend on the signal gain derived from positive feedback, and
so there is a critical trade-off between providing feedback strong enough to
support the sophisticated computations, while maintaining overall circuit
stability. We consider the question of how to reason about stability in very
large distributed networks of such circuits. We approach this problem by
approximating the regular cortical architecture as many interconnected
cooperative-competitive modules. We demonstrate that by properly understanding
the behavior of this small computational module, one can reason over the
stability and convergence of very large networks composed of these modules. We
obtain parameter ranges in which the WTA circuit operates in a high-gain
regime, is stable, and can be aggregated arbitrarily to form large stable
networks. We use nonlinear Contraction Theory to establish conditions for
stability in the fully nonlinear case, and verify these solutions using
numerical simulations. The derived bounds allow modes of operation in which the
WTA network is multi-stable and exhibits state-dependent persistent activities.
Our approach is sufficiently general to reason systematically about the
stability of any network, biological or technological, composed of networks of
small modules that express competition through shared inhibition.Comment: 7 Figure
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Always on my mind: Cross-brain associations of mental health symptoms during simultaneous parent-child scanning.
How parents manifest symptoms of anxiety or depression may affect how children learn to modulate their own distress, thereby influencing the children's risk for developing an anxiety or mood disorder. Conversely, children's mental health symptoms may impact parents' experiences of negative emotions. Therefore, mental health symptoms can have bidirectional effects in parent-child relationships, particularly during moments of distress or frustration (e.g., when a parent or child makes a costly mistake). The present study used simultaneous functional magnetic resonance imaging (fMRI) of parent-adolescent dyads to examine how brain activity when responding to each other's costly errors (i.e., dyadic error processing) may be associated with symptoms of anxiety and depression. While undergoing simultaneous fMRI scans, healthy dyads completed a task involving feigned errors that indicated their family member made a costly mistake. Inter-brain, random-effects multivariate modeling revealed that parents who exhibited decreased medial prefrontal cortex and posterior cingulate cortex activation when viewing their child's costly error response had children with more symptoms of depression and anxiety. Adolescents with increased anterior insula activation when viewing a costly error made by their parent had more anxious parents. These results reveal cross-brain associations between mental health symptomatology and brain activity during parent-child dyadic error processing
Interpersonal Neural Entrainment during Early Social Interaction
Currently, we understand much about how children’s brains attend to and learn from information presented while they are alone, viewing a screen – but less about how interpersonal social influences are substantiated in the brain. Here, we consider research that examines how social behaviors affect not one, but both partners in a dyad. We review studies that measured interpersonal neural entrainment during early social interaction, considering two ways of measuring entrainment: concurrent entrainment (e.g., ‘when A is high, B is high’ – also known as synchrony) and sequential entrainment (‘changes in A forward-predict changes in B’). We discuss possible causes of interpersonal neural entrainment, and consider whether it is merely an epiphenomenon, or whether it plays an independent, mechanistic role in early attention and learning
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