258 research outputs found
Finding and counting vertex-colored subtrees
The problems studied in this article originate from the Graph Motif problem
introduced by Lacroix et al. in the context of biological networks. The problem
is to decide if a vertex-colored graph has a connected subgraph whose colors
equal a given multiset of colors . It is a graph pattern-matching problem
variant, where the structure of the occurrence of the pattern is not of
interest but the only requirement is the connectedness. Using an algebraic
framework recently introduced by Koutis et al., we obtain new FPT algorithms
for Graph Motif and variants, with improved running times. We also obtain
results on the counting versions of this problem, proving that the counting
problem is FPT if M is a set, but becomes W[1]-hard if M is a multiset with two
colors. Finally, we present an experimental evaluation of this approach on real
datasets, showing that its performance compares favorably with existing
software.Comment: Conference version in International Symposium on Mathematical
Foundations of Computer Science (MFCS), Brno : Czech Republic (2010) Journal
Version in Algorithmic
Families with infants: a general approach to solve hard partition problems
We introduce a general approach for solving partition problems where the goal
is to represent a given set as a union (either disjoint or not) of subsets
satisfying certain properties. Many NP-hard problems can be naturally stated as
such partition problems. We show that if one can find a large enough system of
so-called families with infants for a given problem, then this problem can be
solved faster than by a straightforward algorithm. We use this approach to
improve known bounds for several NP-hard problems as well as to simplify the
proofs of several known results.
For the chromatic number problem we present an algorithm with
time and exponential space for graphs of average
degree . This improves the algorithm by Bj\"{o}rklund et al. [Theory Comput.
Syst. 2010] that works for graphs of bounded maximum (as opposed to average)
degree and closes an open problem stated by Cygan and Pilipczuk [ICALP 2013].
For the traveling salesman problem we give an algorithm working in
time and polynomial space for graphs of average
degree . The previously known results of this kind is a polyspace algorithm
by Bj\"{o}rklund et al. [ICALP 2008] for graphs of bounded maximum degree and
an exponential space algorithm for bounded average degree by Cygan and
Pilipczuk [ICALP 2013].
For counting perfect matching in graphs of average degree~ we present an
algorithm with running time and polynomial
space. Recent algorithms of this kind due to Cygan, Pilipczuk [ICALP 2013] and
Izumi, Wadayama [FOCS 2012] (for bipartite graphs only) use exponential space.Comment: 18 pages, a revised version of this paper is available at
http://arxiv.org/abs/1410.220
Factoring bivariate lacunary polynomials without heights
We present an algorithm which computes the multilinear factors of bivariate
lacunary polynomials. It is based on a new Gap Theorem which allows to test
whether a polynomial of the form P(X,X+1) is identically zero in time
polynomial in the number of terms of P(X,Y). The algorithm we obtain is more
elementary than the one by Kaltofen and Koiran (ISSAC'05) since it relies on
the valuation of polynomials of the previous form instead of the height of the
coefficients. As a result, it can be used to find some linear factors of
bivariate lacunary polynomials over a field of large finite characteristic in
probabilistic polynomial time.Comment: 25 pages, 1 appendi
Directed Hamiltonicity and Out-Branchings via Generalized Laplacians
We are motivated by a tantalizing open question in exact algorithms: can we
detect whether an -vertex directed graph has a Hamiltonian cycle in time
significantly less than ? We present new randomized algorithms that
improve upon several previous works:
1. We show that for any constant and prime we can count the
Hamiltonian cycles modulo in
expected time less than for a constant that depends only on and
. Such an algorithm was previously known only for the case of counting
modulo two [Bj\"orklund and Husfeldt, FOCS 2013].
2. We show that we can detect a Hamiltonian cycle in
time and polynomial space, where is the size of the maximum
independent set in . In particular, this yields an time
algorithm for bipartite directed graphs, which is faster than the
exponential-space algorithm in [Cygan et al., STOC 2013].
Our algorithms are based on the algebraic combinatorics of "incidence
assignments" that we can capture through evaluation of determinants of
Laplacian-like matrices, inspired by the Matrix--Tree Theorem for directed
graphs. In addition to the novel algorithms for directed Hamiltonicity, we use
the Matrix--Tree Theorem to derive simple algebraic algorithms for detecting
out-branchings. Specifically, we give an -time randomized algorithm
for detecting out-branchings with at least internal vertices, improving
upon the algorithms of [Zehavi, ESA 2015] and [Bj\"orklund et al., ICALP 2015].
We also present an algebraic algorithm for the directed -Leaf problem, based
on a non-standard monomial detection problem
Randomized Parameterized Algorithms for the Kidney Exchange Problem
In order to increase the potential kidney transplants between patients and their incompatible donors, kidney exchange programs have been created in many countries. In the programs, designing algorithms for the kidney exchange problem plays a critical role. The graph theory model of the kidney exchange problem is to find a maximum weight packing of vertex-disjoint cycles and chains for a given weighted digraph. In general, the length of cycles is not more than a given constant L (typically 2 L 5), and the objective function corresponds to maximizing the number of possible kidney transplants. In this paper, we study the parameterized complexity and randomized algorithms for the kidney exchange problem without chains from theory. We construct two different parameterized models of the kidney exchange problem for two cases L = 3 and L 3, and propose two randomized parameterized algorithms based on the random partitioning technique and the randomized algebraic technique, respectively
- …