Learning Rigid Image Registration - Utilizing Convolutional Neural Networks for Medical Image Registration

Many traditional computer vision tasks, such as segmentation, have seen large step-changes in accuracy and/or speed with the application of Convolutional Neural Networks (CNNs). Image registration, the alignment of two or more images to a common space, is a fundamental step in many medical imaging workflows. In this paper we investigate whether these techniques can also bring tangible benefits to the registration task. We describe and evaluate the use of convolutional neural networks (CNNs) for both mono- and multi- modality registration and compare their performance to more traditional schemes, namely multi-scale, iterative registration. This paper also investigates incorporating inverse consistency of the learned spatial transformations to impose additional constraints on the network during training and investigate any benefit in accuracy during detection. The approaches are validated with a series of artificial mono-modal registration tasks utilizing T1-weighted MR brain i mages from the Open Access Series of Imaging Studies (OASIS) study and IXI brain development dataset and a series of real multi-modality registration tasks using T1-weighted and T2-weighted MR brain images from the 2015 Ischemia Stroke Lesion segmentation (ISLES) challenge. The results demonstrate that CNNs give excellent performance for both mono- and multi- modality head and neck registration compared to the baseline method with significantly fewer outliers and lower mean errors

Compressing networks with super nodes

Community detection is a commonly used technique for identifying groups in a network based on similarities in connectivity patterns. To facilitate community detection in large networks, we recast the network to be partitioned into a smaller network of 'super nodes', each super node comprising one or more nodes in the original network. To define the seeds of our super nodes, we apply the 'CoreHD' ranking from dismantling and decycling. We test our approach through the analysis of two common methods for community detection: modularity maximization with the Louvain algorithm and maximum likelihood optimization for fitting a stochastic block model. Our results highlight that applying community detection to the compressed network of super nodes is significantly faster while successfully producing partitions that are more aligned with the local network connectivity, more stable across multiple (stochastic) runs within and between community detection algorithms, and overlap well with the results obtained using the full network

Minimally supervised induction of morphology through bitexts

textA knowledge of morphology can be useful for many natural language processing systems. Thus, much effort has been expended in developing accurate computational tools for morphology that lemmatize, segment and generate new forms. The most powerful and accurate of these have been manually encoded, such endeavors being without exception expensive and time-consuming. There have been consequently many attempts to reduce this cost in the development of morphological systems through the development of unsupervised or minimally supervised algorithms and learning methods for acquisition of morphology. These efforts have yet to produce a tool that approaches the performance of manually encoded systems. Here, I present a strategy for dealing with morphological clustering and segmentation in a minimally supervised manner but one that will be more linguistically informed than previous unsupervised approaches. That is, this study will attempt to induce clusters of words from an unannotated text that are inflectional variants of each other. Then a set of inflectional suffixes by part-of-speech will be induced from these clusters. This level of detail is made possible by a method known as alignment and transfer (AT), among other names, an approach that uses aligned bitexts to transfer linguistic resources developed for one language–the source language–to another language–the target. This approach has a further advantage in that it allows a reduction in the amount of training data without a significant degradation in performance making it useful in applications targeted at data collected from endangered languages. In the current study, however, I use English as the source and German as the target for ease of evaluation and for certain typlogical properties of German. The two main tasks, that of clustering and segmentation, are approached as sequential tasks with the clustering informing the segmentation to allow for greater accuracy in morphological analysis. While the performance of these methods does not exceed the current roster of unsupervised or minimally supervised approaches to morphology acquisition, it attempts to integrate more learning methods than previous studies. Furthermore, it attempts to learn inflectional morphology as opposed to derivational morphology, which is a crucial distinction in linguistics.Linguistic

Automatic Synchronization of Multi-User Photo Galleries

In this paper we address the issue of photo galleries synchronization, where pictures related to the same event are collected by different users. Existing solutions to address the problem are usually based on unrealistic assumptions, like time consistency across photo galleries, and often heavily rely on heuristics, limiting therefore the applicability to real-world scenarios. We propose a solution that achieves better generalization performance for the synchronization task compared to the available literature. The method is characterized by three stages: at first, deep convolutional neural network features are used to assess the visual similarity among the photos; then, pairs of similar photos are detected across different galleries and used to construct a graph; eventually, a probabilistic graphical model is used to estimate the temporal offset of each pair of galleries, by traversing the minimum spanning tree extracted from this graph. The experimental evaluation is conducted on four publicly available datasets covering different types of events, demonstrating the strength of our proposed method. A thorough discussion of the obtained results is provided for a critical assessment of the quality in synchronization.Comment: ACCEPTED to IEEE Transactions on Multimedi