Memetic Artificial Bee Colony Algorithm for Large-Scale Global Optimization

Memetic computation (MC) has emerged recently as a new paradigm of efficient algorithms for solving the hardest optimization problems. On the other hand, artificial bees colony (ABC) algorithms demonstrate good performances when solving continuous and combinatorial optimization problems. This study tries to use these technologies under the same roof. As a result, a memetic ABC (MABC) algorithm has been developed that is hybridized with two local search heuristics: the Nelder-Mead algorithm (NMA) and the random walk with direction exploitation (RWDE). The former is attended more towards exploration, while the latter more towards exploitation of the search space. The stochastic adaptation rule was employed in order to control the balancing between exploration and exploitation. This MABC algorithm was applied to a Special suite on Large Scale Continuous Global Optimization at the 2012 IEEE Congress on Evolutionary Computation. The obtained results the MABC are comparable with the results of DECC-G, DECC-G*, and MLCC.Comment: CONFERENCE: IEEE Congress on Evolutionary Computation, Brisbane, Australia, 201

A memetic algorithm with adaptive hill climbing strategy for dynamic optimization problems

Copyright @ Springer-Verlag 2008Dynamic optimization problems challenge traditional evolutionary algorithms seriously since they, once converged, cannot adapt quickly to environmental changes. This paper investigates the application of memetic algorithms, a class of hybrid evolutionary algorithms, for dynamic optimization problems. An adaptive hill climbing method is proposed as the local search technique in the framework of memetic algorithms, which combines the features of greedy crossover-based hill climbing and steepest mutation-based hill climbing. In order to address the convergence problem, two diversity maintaining methods, called adaptive dual mapping and triggered random immigrants, respectively, are also introduced into the proposed memetic algorithm for dynamic optimization problems. Based on a series of dynamic problems generated from several stationary benchmark problems, experiments are carried out to investigate the performance of the proposed memetic algorithm in comparison with some peer evolutionary algorithms. The experimental results show the efficiency of the proposed memetic algorithm in dynamic environments.This work was supported by the National Nature Science Foundation of China (NSFC) under Grant Nos. 70431003 and 70671020, the National Innovation Research Community Science Foundation of China under Grant No. 60521003, and the National Support Plan of China under Grant No. 2006BAH02A09 and the Engineering and Physical Sciences Research Council (EPSRC) of UK under Grant EP/E060722/01

A niching memetic algorithm for simultaneous clustering and feature selection

Clustering is inherently a difficult task, and is made even more difficult when the selection of relevant features is also an issue. In this paper we propose an approach for simultaneous clustering and feature selection using a niching memetic algorithm. Our approach (which we call NMA_CFS) makes feature selection an integral part of the global clustering search procedure and attempts to overcome the problem of identifying less promising locally optimal solutions in both clustering and feature selection, without making any a priori assumption about the number of clusters. Within the NMA_CFS procedure, a variable composite representation is devised to encode both feature selection and cluster centers with different numbers of clusters. Further, local search operations are introduced to refine feature selection and cluster centers encoded in the chromosomes. Finally, a niching method is integrated to preserve the population diversity and prevent premature convergence. In an experimental evaluation we demonstrate the effectiveness of the proposed approach and compare it with other related approaches, using both synthetic and real data

Exploiting medical-expert knowledge via a novel memetic algorithm for the inference of gene regulatory networks.

This study introduces an innovative memetic algorithm for optimizing the consensus of well-adapted techniques for the inference of gene regulation networks. Building on the methodology of a previous proposal (GENECI), this research adds a local search phase that incorporates prior knowledge about gene interactions, thereby enhancing the optimization process under the influence of domain expert. The algorithm focuses on the evaluation of candidate solutions through a detailed evolutionary process, where known gene interactions guide the evolution of such solutions (individuals). This approach was subjected to rigorous testing using benchmarks from editions 3 and 4 of the DREAM challenges and the yeast network of IRMA, demonstrating a significant improvement in accuracy compared to previous related approaches. The results highlight the effectiveness of the algorithm, even when only 5% of the known interactions are used as a reference. This advancement represents a significant step in the inference of gene regulation networks, providing a more precise and adaptable tool for genomic research.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

QAPgrid: A Two Level QAP-Based Approach for Large-Scale Data Analysis and Visualization

Background: The visualization of large volumes of data is a computationally challenging task that often promises rewarding new insights. There is great potential in the application of new algorithms and models from combinatorial optimisation. Datasets often contain “hidden regularities” and a combined identification and visualization method should reveal these structures and present them in a way that helps analysis. While several methodologies exist, including those that use non-linear optimization algorithms, severe limitations exist even when working with only a few hundred objects. Methodology/Principal Findings: We present a new data visualization approach (QAPgrid) that reveals patterns of similarities and differences in large datasets of objects for which a similarity measure can be computed. Objects are assigned to positions on an underlying square grid in a two-dimensional space. We use the Quadratic Assignment Problem (QAP) as a mathematical model to provide an objective function for assignment of objects to positions on the grid. We employ a Memetic Algorithm (a powerful metaheuristic) to tackle the large instances of this NP-hard combinatorial optimization problem, and we show its performance on the visualization of real data sets. Conclusions/Significance: Overall, the results show that QAPgrid algorithm is able to produce a layout that represents the relationships between objects in the data set. Furthermore, it also represents the relationships between clusters that are feed into the algorithm. We apply the QAPgrid on the 84 Indo-European languages instance, producing a near-optimal layout. Next, we produce a layout of 470 world universities with an observed high degree of correlation with the score used by the Academic Ranking of World Universities compiled in the The Shanghai Jiao Tong University Academic Ranking of World Universities without the need of an ad hoc weighting of attributes. Finally, our Gene Ontology-based study on Saccharomyces cerevisiae fully demonstrates the scalability and precision of our method as a novel alternative tool for functional genomics

Hierarchical Clustering Using the Arithmetic-Harmonic Cut: Complexity and Experiments

Clustering, particularly hierarchical clustering, is an important method for understanding and analysing data across a wide variety of knowledge domains with notable utility in systems where the data can be classified in an evolutionary context. This paper introduces a new hierarchical clustering problem defined by a novel objective function we call the arithmetic-harmonic cut. We show that the problem of finding such a cut is -hard and -hard but is fixed-parameter tractable, which indicates that although the problem is unlikely to have a polynomial time algorithm (even for approximation), exact parameterized and local search based techniques may produce workable algorithms. To this end, we implement a memetic algorithm for the problem and demonstrate the effectiveness of the arithmetic-harmonic cut on a number of datasets including a cancer type dataset and a corona virus dataset. We show favorable performance compared to currently used hierarchical clustering techniques such as -Means, Graclus and Normalized-Cut. The arithmetic-harmonic cut metric overcoming difficulties other hierarchal methods have in representing both intercluster differences and intracluster similarities