Using linked data for integrating educational medical web databases based on bioMedical ontologies

Open data are playing a vital role in different communities, including governments, businesses, and education. This revolution has had a high impact on the education field. Recently, Linked Data are being adopted for publishing and connecting data on the web by exposing and connecting data which were not previously linked. In the context of education, applying Linked Data to the growing amount of open data used for learning is potentially highly beneficial. This paper proposes a system that tackles the challenges of data acquisition and integration from distributed web data sources into one linked dataset. The application domain of this work is medical education, and the focus is on integrating educational content in the form of articles published in online educational libraries and Web 2.0 content that can be used for education. The process of integrating a collection of heterogeneous resources is to create links that connect the resources collected from distributed web data sources based on their semantics. The proposed system harvests metadata from distributed web sources and enriches it with concepts from biomedical ontologies, such as SNOMED CT, that enable its linking. The final result of building this system is a linked dataset of more than 10,000 resources collected from PubMed Library, YouTube channels, and Blogging platforms. The final linked dataset is evaluated by developing information retrieval methods that exploit the SNOMED CT hierarchical relations for accessing and querying the dataset. Ontology-based browsing method has been developed for exploring the dataset, and the browsing results have been clustered to evaluate its linkages. Furthermore, ontology-based query searching method has been developed and tested to enhance the discoverability of the data. The results were promising and had shown that using SNOMED CT for integrating distributed resources on the web is beneficial

Improving Knowledge Retrieval in Digital Libraries Applying Intelligent Techniques

Nowadays an enormous quantity of heterogeneous and distributed information is stored in the digital University. Exploring online collections to find knowledge relevant to a user’s interests is a challenging work. The artificial intelligence and Semantic Web provide a common framework that allows knowledge to be shared and reused in an efficient way. In this work we propose a comprehensive approach for discovering E-learning objects in large digital collections based on analysis of recorded semantic metadata in those objects and the application of expert system technologies. We have used Case Based-Reasoning methodology to develop a prototype for supporting efficient retrieval knowledge from online repositories. We suggest a conceptual architecture for a semantic search engine. OntoUS is a collaborative effort that proposes a new form of interaction between users and digital libraries, where the latter are adapted to users and their surroundings

Applications and Uses of Dental Ontologies

The development of a number of large-scale semantically-rich ontologies for biomedicine attests to the interest of life science researchers and clinicians in Semantic Web technologies. To date, however, the dental profession has lagged behind other areas of biomedicine in developing a commonly accepted, standardized ontology to support the representation of dental knowledge and information. This paper attempts to identify some of the potential uses of dental ontologies as part of an effort to motivate the development of ontologies for the dental domain. The identified uses of dental ontologies include support for advanced data analysis and knowledge discovery capabilities, the implementation of novel education and training technologies, the development of information exchange and interoperability solutions, the better integration of scientific and clinical evidence into clinical decision-making, and the development of better clinical decision support systems. Some of the social issues raised by these uses include the ethics of using patient data without consent, the role played by ontologies in enforcing compliance with regulatory criteria and legislative constraints, and the extent to which the advent of the Semantic Web introduces new training requirements for dental students. Some of the technological issues relate to the need to extract information from a variety of resources (for example, natural language texts), the need to automatically annotate information resources with ontology elements, and the need to establish mappings between a variety of existing dental terminologies

A Framework for Semi-automated Web Service Composition in Semantic Web

Number of web services available on Internet and its usage are increasing very fast. In many cases, one service is not enough to complete the business requirement; composition of web services is carried out. Autonomous composition of web services to achieve new functionality is generating considerable attention in semantic web domain. Development time and effort for new applications can be reduced with service composition. Various approaches to carry out automated composition of web services are discussed in literature. Web service composition using ontologies is one of the effective approaches. In this paper we demonstrate how the ontology based composition can be made faster for each customer. We propose a framework to provide precomposed web services to fulfil user requirements. We detail how ontology merging can be used for composition which expedites the whole process. We discuss how framework provides customer specific ontology merging and repository. We also elaborate on how merging of ontologies is carried out.Comment: 6 pages, 9 figures; CUBE 2013 International Conferenc

An ontology to standardize research output of nutritional epidemiology : from paper-based standards to linked content

Background: The use of linked data in the Semantic Web is a promising approach to add value to nutrition research. An ontology, which defines the logical relationships between well-defined taxonomic terms, enables linking and harmonizing research output. To enable the description of domain-specific output in nutritional epidemiology, we propose the Ontology for Nutritional Epidemiology (ONE) according to authoritative guidance for nutritional epidemiology. Methods: Firstly, a scoping review was conducted to identify existing ontology terms for reuse in ONE. Secondly, existing data standards and reporting guidelines for nutritional epidemiology were converted into an ontology. The terms used in the standards were summarized and listed separately in a taxonomic hierarchy. Thirdly, the ontologies of the nutritional epidemiologic standards, reporting guidelines, and the core concepts were gathered in ONE. Three case studies were included to illustrate potential applications: (i) annotation of existing manuscripts and data, (ii) ontology-based inference, and (iii) estimation of reporting completeness in a sample of nine manuscripts. Results: Ontologies for food and nutrition (n = 37), disease and specific population (n = 100), data description (n = 21), research description (n = 35), and supplementary (meta) data description (n = 44) were reviewed and listed. ONE consists of 339 classes: 79 new classes to describe data and 24 new classes to describe the content of manuscripts. Conclusion: ONE is a resource to automate data integration, searching, and browsing, and can be used to assess reporting completeness in nutritional epidemiology

An ontology for the description of and navigation through philosophical resources

What does it mean for a student to come to an understanding of a philosophical standpoint and can the explosion of resources now available on the web support this process, or is it inclined instead to create more confusion? We believe that a possible answer to the problem of finding a means through the morass of information on the web to the philosophical insights it conceals and can be made to reveal lies in the process of narrative pathway generation. That is, the active linking of resources into a learning path that contextualizes them with respect to one another. This result can be achieved only if the content of the resources is indexed, not just their status as a text document, an image or a video. To this aim, we propose a formal conceptualization of the domain of philosophy, an ontology that would allow the categorization of resources according to a series of pre-agreed content descriptors. Within an e-learning scenario, a teacher could use a tool comprising such an ontology to annotate at various levels of granularity available philosophical materials, and let the students explore this semantic space in an unsupervised manner, according to pre-defined narrative pathways

Context and Keyword Extraction in Plain Text Using a Graph Representation

Document indexation is an essential task achieved by archivists or automatic indexing tools. To retrieve relevant documents to a query, keywords describing this document have to be carefully chosen. Archivists have to find out the right topic of a document before starting to extract the keywords. For an archivist indexing specialized documents, experience plays an important role. But indexing documents on different topics is much harder. This article proposes an innovative method for an indexing support system. This system takes as input an ontology and a plain text document and provides as output contextualized keywords of the document. The method has been evaluated by exploiting Wikipedia's category links as a termino-ontological resources

Ontology of core data mining entities

In this article, we present OntoDM-core, an ontology of core data mining entities. OntoDM-core defines themost essential datamining entities in a three-layered ontological structure comprising of a specification, an implementation and an application layer. It provides a representational framework for the description of mining structured data, and in addition provides taxonomies of datasets, data mining tasks, generalizations, data mining algorithms and constraints, based on the type of data. OntoDM-core is designed to support a wide range of applications/use cases, such as semantic annotation of data mining algorithms, datasets and results; annotation of QSAR studies in the context of drug discovery investigations; and disambiguation of terms in text mining. The ontology has been thoroughly assessed following the practices in ontology engineering, is fully interoperable with many domain resources and is easy to extend