2,381 research outputs found
PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI
In this paper we present a novel method for the correction of motion
artifacts that are present in fetal Magnetic Resonance Imaging (MRI) scans of
the whole uterus. Contrary to current slice-to-volume registration (SVR)
methods, requiring an inflexible anatomical enclosure of a single investigated
organ, the proposed patch-to-volume reconstruction (PVR) approach is able to
reconstruct a large field of view of non-rigidly deforming structures. It
relaxes rigid motion assumptions by introducing a specific amount of redundant
information that is exploited with parallelized patch-wise optimization,
super-resolution, and automatic outlier rejection. We further describe and
provide an efficient parallel implementation of PVR allowing its execution
within reasonable time on commercially available graphics processing units
(GPU), enabling its use in the clinical practice. We evaluate PVR's
computational overhead compared to standard methods and observe improved
reconstruction accuracy in presence of affine motion artifacts of approximately
30% compared to conventional SVR in synthetic experiments. Furthermore, we have
evaluated our method qualitatively and quantitatively on real fetal MRI data
subject to maternal breathing and sudden fetal movements. We evaluate
peak-signal-to-noise ratio (PSNR), structural similarity index (SSIM), and
cross correlation (CC) with respect to the originally acquired data and provide
a method for visual inspection of reconstruction uncertainty. With these
experiments we demonstrate successful application of PVR motion compensation to
the whole uterus, the human fetus, and the human placenta.Comment: 10 pages, 13 figures, submitted to IEEE Transactions on Medical
Imaging. v2: wadded funders acknowledgements to preprin
Quantitative evaluation of image registration techniques in the case of retinal images
International audienceIn human retina observation (with non mydriatic optical microscopes), an image registration process is often employed to enlarge the field of view. Analyzing all the images takes a lot of time. Numerous techniques have been proposed to perform the registration process. Its good evaluation is a difficult question that is then raising. This article presents the use of two quantitative criterions to evaluate and compare some classical feature-based image registration techniques. The images are first segmented and the resulting binary images are then registered. The good quality of the registration process is evaluated with a normalized criterion based on the ϵ dissimilarity criterion, and the figure of merit criterion (fom), for 25 pairs of images with a manual selection of control points. These criterions are normalized by the results of the affine method (considered as the most simple method). Then, for each pair, the influence of the number of points used to perform the registration is evaluated
Automatic quantitative evaluation of image registration techniques with the "epsilon" dissimilarity criterion in the case of retinal images.
International audienceIn human retina observation (with non mydriatic optical microscopes), a registration process is often employed to enlarge the field of view. For the ophthalmologist, this is a way to spare time browsing all the images. A lot of techniques have been proposed to perform this registration process, and indeed, its good evaluation is a question that can be raised. This article presents the use of the "epsilon" dissimilarity criterion to evaluate and compare some classical featurebased image registration techniques. The problem of retina images registration is employed as an example, but it could also be used in other applications. The images are first segmented and these segmentations are registered. The good quality of this registration is evaluated with the "epsilon" dissimilarity criterion for 25 pairs of images with a manual selection of control points. This study can be useful in order to choose the type of registration method and to evaluate the results of a new one
Context-based Normalization of Histological Stains using Deep Convolutional Features
While human observers are able to cope with variations in color and
appearance of histological stains, digital pathology algorithms commonly
require a well-normalized setting to achieve peak performance, especially when
a limited amount of labeled data is available. This work provides a fully
automated, end-to-end learning-based setup for normalizing histological stains,
which considers the texture context of the tissue. We introduce Feature Aware
Normalization, which extends the framework of batch normalization in
combination with gating elements from Long Short-Term Memory units for
normalization among different spatial regions of interest. By incorporating a
pretrained deep neural network as a feature extractor steering a pixelwise
processing pipeline, we achieve excellent normalization results and ensure a
consistent representation of color and texture. The evaluation comprises a
comparison of color histogram deviations, structural similarity and measures
the color volume obtained by the different methods.Comment: In: 3rd Workshop on Deep Learning in Medical Image Analysis (DLMIA
2017
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