The MeSH-gram Neural Network Model: Extending Word Embedding Vectors with MeSH Concepts for UMLS Semantic Similarity and Relatedness in the Biomedical Domain

Eliciting semantic similarity between concepts in the biomedical domain remains a challenging task. Recent approaches founded on embedding vectors have gained in popularity as they risen to efficiently capture semantic relationships The underlying idea is that two words that have close meaning gather similar contexts. In this study, we propose a new neural network model named MeSH-gram which relies on a straighforward approach that extends the skip-gram neural network model by considering MeSH (Medical Subject Headings) descriptors instead words. Trained on publicly available corpus PubMed MEDLINE, MeSH-gram is evaluated on reference standards manually annotated for semantic similarity. MeSH-gram is first compared to skip-gram with vectors of size 300 and at several windows contexts. A deeper comparison is performed with tewenty existing models. All the obtained results of Spearman's rank correlations between human scores and computed similarities show that MeSH-gram outperforms the skip-gram model, and is comparable to the best methods but that need more computation and external resources.Comment: 6 pages, 2 table

SensEmbed: Learning sense embeddings for word and relational similarity

Word embeddings have recently gained considerable popularity for modeling words in different Natural Language Processing (NLP) tasks including semantic similarity measurement. However, notwithstanding their success, word embeddings are by their very nature unable to capture polysemy, as different meanings of a word are conflated into a single representation. In addition, their learning process usually relies on massive corpora only, preventing them from taking advantage of structured knowledge. We address both issues by proposing a multifaceted approach that transforms word embeddings to the sense level and leverages knowledge from a large semantic network for effective semantic similarity measurement. We evaluate our approach on word similarity and relational similarity frameworks, reporting state-of-the-art performance on multiple datasets

An effective, low-cost measure of semantic relatedness obtained from Wikipedia links

This paper describes a new technique for obtaining measures of semantic relatedness. Like other recent approaches, it uses Wikipedia to provide structured world knowledge about the terms of interest. Out approach is unique in that it does so using the hyperlink structure of Wikipedia rather than its category hierarchy or textual content. Evaluation with manually defined measures of semantic relatedness reveals this to be an effective compromise between the ease of computation of the former approach and the accuracy of the latter

A Trio Neural Model for Dynamic Entity Relatedness Ranking

Measuring entity relatedness is a fundamental task for many natural language processing and information retrieval applications. Prior work often studies entity relatedness in static settings and an unsupervised manner. However, entities in real-world are often involved in many different relationships, consequently entity-relations are very dynamic over time. In this work, we propose a neural networkbased approach for dynamic entity relatedness, leveraging the collective attention as supervision. Our model is capable of learning rich and different entity representations in a joint framework. Through extensive experiments on large-scale datasets, we demonstrate that our method achieves better results than competitive baselines.Comment: In Proceedings of CoNLL 201

Distributional Measures of Semantic Distance: A Survey

The ability to mimic human notions of semantic distance has widespread applications. Some measures rely only on raw text (distributional measures) and some rely on knowledge sources such as WordNet. Although extensive studies have been performed to compare WordNet-based measures with human judgment, the use of distributional measures as proxies to estimate semantic distance has received little attention. Even though they have traditionally performed poorly when compared to WordNet-based measures, they lay claim to certain uniquely attractive features, such as their applicability in resource-poor languages and their ability to mimic both semantic similarity and semantic relatedness. Therefore, this paper presents a detailed study of distributional measures. Particular attention is paid to flesh out the strengths and limitations of both WordNet-based and distributional measures, and how distributional measures of distance can be brought more in line with human notions of semantic distance. We conclude with a brief discussion of recent work on hybrid measures