Semantically Resolving Type Mismatches in Scientific Workflows

Scientists are increasingly utilizing Grids to manage large data sets and execute scientific experiments on distributed resources. Scientific workflows are used as means for modeling and enacting scientific experiments. Windows Workflow Foundation (WF) is a major component of Microsoft’s .NET technology which offers lightweight support for long-running workflows. It provides a comfortable graphical and programmatic environment for the development of extended BPEL-style workflows. WF’s visual features ease the syntactic composition of Web services into scientific workflows but do nothing to assure that information passed between services has consistent semantic types or representations or that deviant flows, errors and compensations are handled meaningfully. In this paper we introduce SAWSDL-compliant annotations for WF and use them with a semantic reasoner to guarantee semantic type correctness in scientific workflows. Examples from bioinformatics are presented

A linked data compliant framework for dynamic and web-scale consumption of web services

The While Semantic Web Services (SWS) research aims at automating Web service tasks such as discovery, orchestration and execution, its take-up is very limited so far. This is due to several reasons, such as inherent complexity of existing SWS frameworks and the considerable costs involved in creating correct SWS descriptions. In addition, while semantics are in use to enable tasks such as discovery, interaction between service consumers, providers and brokering environments is still not supported by semantic message descriptions. On the other hand, the Linked Data approach has produced a set of established principles for sharing and describing data, such as RDF as representation language and the integral use of dereferencable URIs. In this paper we propose to apply those principles to expose Web services and Web APIs and introduce a framework in which service registries as well as services contribute to the automation of service discovery, and hence, workload is distributed more efficiently. This is achieved by developing a Linked Data compliant Web services framework with that communicate with semi-centralised registries but compute their suitability for a given request themselves. All communications among different framework components are using RDF-based message protocols including service input and output. This framework aims at optimizing load balance and performance by dynamically assembling services at run time in a massively distributed Web environment

Automatic annotation of bioinformatics workflows with biomedical ontologies

Legacy scientific workflows, and the services within them, often present scarce and unstructured (i.e. textual) descriptions. This makes it difficult to find, share and reuse them, thus dramatically reducing their value to the community. This paper presents an approach to annotating workflows and their subcomponents with ontology terms, in an attempt to describe these artifacts in a structured way. Despite a dearth of even textual descriptions, we automatically annotated 530 myExperiment bioinformatics-related workflows, including more than 2600 workflow-associated services, with relevant ontological terms. Quantitative evaluation of the Information Content of these terms suggests that, in cases where annotation was possible at all, the annotation quality was comparable to manually curated bioinformatics resources.Comment: 6th International Symposium on Leveraging Applications (ISoLA 2014 conference), 15 pages, 4 figure

NLSC: Unrestricted Natural Language-based Service Composition through Sentence Embeddings

Current approaches for service composition (assemblies of atomic services) require developers to use: (a) domain-specific semantics to formalize services that restrict the vocabulary for their descriptions, and (b) translation mechanisms for service retrieval to convert unstructured user requests to strongly-typed semantic representations. In our work, we argue that effort to developing service descriptions, request translations, and matching mechanisms could be reduced using unrestricted natural language; allowing both: (1) end-users to intuitively express their needs using natural language, and (2) service developers to develop services without relying on syntactic/semantic description languages. Although there are some natural language-based service composition approaches, they restrict service retrieval to syntactic/semantic matching. With recent developments in Machine learning and Natural Language Processing, we motivate the use of Sentence Embeddings by leveraging richer semantic representations of sentences for service description, matching and retrieval. Experimental results show that service composition development effort may be reduced by more than 44\% while keeping a high precision/recall when matching high-level user requests with low-level service method invocations.Comment: This paper will appear on SCC'19 (IEEE International Conference on Services Computing) on July 1

Towards a service-oriented e-infrastructure for multidisciplinary environmental research

Research e-infrastructures are considered to have generic and thematic parts. The generic part provids high-speed networks, grid (large-scale distributed computing) and database systems (digital repositories and data transfer systems) applicable to all research commnities irrespective of discipline. Thematic parts are specific deployments of e-infrastructures to support diverse virtual research communities. The needs of a virtual community of multidisciplinary envronmental researchers are yet to be investigated. We envisage and argue for an e-infrastructure that will enable environmental researchers to develop environmental models and software entirely out of existing components through loose coupling of diverse digital resources based on the service-oriented achitecture. We discuss four specific aspects for consideration for a future e-infrastructure: 1) provision of digital resources (data, models & tools) as web services, 2) dealing with stateless and non-transactional nature of web services using workflow management systems, 3) enabling web servce discovery, composition and orchestration through semantic registries, and 4) creating synergy with existing grid infrastructures

Semantic Web Technologies in Support of Service Oriented Architecture Governance

As Service Oriented Architecture (SOA) deployments gradually mature they also grow in size and complexity. The number of service providers, services, and service consumers increases, and so do the dependencies among these entities and the various artefacts that describe how services operate, or how they are meant to operate under specific conditions. Appropriate governance over the various phases and activities associated with the service lifecycle is therefore indispensable in order to prevent a SOA deployment from dissolving into an unmanageable infrastructure. The employment of Semantic Web technologies for describing and reasoning about service properties and governance requirements has the potential to greatly enhance the effectiveness and efficiency of SOA Governance solutions by increasing the levels of automation in a wide-range of tasks relating to service lifecycle management. The goal of the proposed research work is to investigate the application of Semantic Web technologies in the context of service lifecycle management, and propose a concrete theoretical and technological approach for supporting SOA Governance through the realisation of semantically-enhanced registry and repository solutions

Services and the Web of Data: an unexploited symbiosis

The Web of Data is certainly a great success for data publication but the state of the art of the applications processing linked data is however not that outstanding. In this paper we highlight an unexploited symbiosis between Semantic Web Services and the Web of Data that could give birth to new families of highly advanced Web applications