A Survey on Metric Learning for Feature Vectors and Structured Data

The need for appropriate ways to measure the distance or similarity between data is ubiquitous in machine learning, pattern recognition and data mining, but handcrafting such good metrics for specific problems is generally difficult. This has led to the emergence of metric learning, which aims at automatically learning a metric from data and has attracted a lot of interest in machine learning and related fields for the past ten years. This survey paper proposes a systematic review of the metric learning literature, highlighting the pros and cons of each approach. We pay particular attention to Mahalanobis distance metric learning, a well-studied and successful framework, but additionally present a wide range of methods that have recently emerged as powerful alternatives, including nonlinear metric learning, similarity learning and local metric learning. Recent trends and extensions, such as semi-supervised metric learning, metric learning for histogram data and the derivation of generalization guarantees, are also covered. Finally, this survey addresses metric learning for structured data, in particular edit distance learning, and attempts to give an overview of the remaining challenges in metric learning for the years to come.Comment: Technical report, 59 pages. Changes in v2: fixed typos and improved presentation. Changes in v3: fixed typos. Changes in v4: fixed typos and new method

Discrete Multi-modal Hashing with Canonical Views for Robust Mobile Landmark Search

Mobile landmark search (MLS) recently receives increasing attention for its great practical values. However, it still remains unsolved due to two important challenges. One is high bandwidth consumption of query transmission, and the other is the huge visual variations of query images sent from mobile devices. In this paper, we propose a novel hashing scheme, named as canonical view based discrete multi-modal hashing (CV-DMH), to handle these problems via a novel three-stage learning procedure. First, a submodular function is designed to measure visual representativeness and redundancy of a view set. With it, canonical views, which capture key visual appearances of landmark with limited redundancy, are efficiently discovered with an iterative mining strategy. Second, multi-modal sparse coding is applied to transform visual features from multiple modalities into an intermediate representation. It can robustly and adaptively characterize visual contents of varied landmark images with certain canonical views. Finally, compact binary codes are learned on intermediate representation within a tailored discrete binary embedding model which preserves visual relations of images measured with canonical views and removes the involved noises. In this part, we develop a new augmented Lagrangian multiplier (ALM) based optimization method to directly solve the discrete binary codes. We can not only explicitly deal with the discrete constraint, but also consider the bit-uncorrelated constraint and balance constraint together. Experiments on real world landmark datasets demonstrate the superior performance of CV-DMH over several state-of-the-art methods

Propagation Kernels

We introduce propagation kernels, a general graph-kernel framework for efficiently measuring the similarity of structured data. Propagation kernels are based on monitoring how information spreads through a set of given graphs. They leverage early-stage distributions from propagation schemes such as random walks to capture structural information encoded in node labels, attributes, and edge information. This has two benefits. First, off-the-shelf propagation schemes can be used to naturally construct kernels for many graph types, including labeled, partially labeled, unlabeled, directed, and attributed graphs. Second, by leveraging existing efficient and informative propagation schemes, propagation kernels can be considerably faster than state-of-the-art approaches without sacrificing predictive performance. We will also show that if the graphs at hand have a regular structure, for instance when modeling image or video data, one can exploit this regularity to scale the kernel computation to large databases of graphs with thousands of nodes. We support our contributions by exhaustive experiments on a number of real-world graphs from a variety of application domains

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues