Emergence of social networks via direct and indirect reciprocity

Many models of social network formation implicitly assume that network properties are static in steady-state. In contrast, actual social networks are highly dynamic: allegiances and collaborations expire and may or may not be renewed at a later date. Moreover, empirical studies show that human social networks are dynamic at the individual level but static at the global level: individuals' degree rankings change considerably over time, whereas network-level metrics such as network diameter and clustering coefficient are relatively stable. There have been some attempts to explain these properties of empirical social networks using agent-based models in which agents play social dilemma games with their immediate neighbours, but can also manipulate their network connections to strategic advantage. However, such models cannot straightforwardly account for reciprocal behaviour based on reputation scores ("indirect reciprocity"), which is known to play an important role in many economic interactions. In order to account for indirect reciprocity, we model the network in a bottom-up fashion: the network emerges from the low-level interactions between agents. By so doing we are able to simultaneously account for the effect of both direct reciprocity (e.g. "tit-for-tat") as well as indirect reciprocity (helping strangers in order to increase one's reputation). This leads to a strategic equilibrium in the frequencies with which strategies are adopted in the population as a whole, but intermittent cycling over different strategies at the level of individual agents, which in turn gives rise to social networks which are dynamic at the individual level but stable at the network level

Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana

Regulation of gene expression is crucial for organism growth, and it is one of the challenges in Systems Biology to reconstruct the underlying regulatory biological networks from transcriptomic data. The formation of lateral roots in Arabidopsis thaliana is stimulated by a cascade of regulators of which only the interactions of its initial elements have been identified. Using simulated gene expression data with known network topology, we compare the performance of inference algorithms, based on different approaches, for which ready-to-use software is available. We show that their performance improves with the network size and the inclusion of mutants. We then analyse two sets of genes, whose activity is likely to be relevant to lateral root initiation in Arabidopsis, by integrating sequence analysis with the intersection of the results of the best performing methods on time series and mutants to infer their regulatory network. The methods applied capture known interactions between genes that are candidate regulators at early stages of development. The network inferred from genes significantly expressed during lateral root formation exhibits distinct scale-free, small world and hierarchical properties and the nodes with a high out-degree may warrant further investigation

Toward optimal multi-objective models of network security: Survey

Information security is an important aspect of a successful business today. However, financial difficulties and budget cuts create a problem of selecting appropriate security measures and keeping networked systems up and running. Economic models proposed in the literature do not address the challenging problem of security countermeasure selection. We have made a classification of security models, which can be used to harden a system in a cost effective manner based on the methodologies used. In addition, we have specified the challenges of the simplified risk assessment approaches used in the economic models and have made recommendations how the challenges can be addressed in order to support decision makers

Towards optimal multi-objective models of network security: survey

Information security is an important aspect of a successful business today. However, financial difficulties and budget cuts create a problem of selecting appropriate security measures and keeping networked systems up and running. Economic models proposed in the literature do not address the challenging problem of security countermeasure selection. We have made a classification of security models, which can be used to harden a system in a cost effective manner based on the methodologies used. In addition, we have specified the challenges of the simplified risk assessment approaches used in the economic models and have made recommendations how the challenges can be addressed in order to support decision makers