Functional Source Separation for EEG-fMRI Fusion: Application to Steady-State Visual Evoked Potentials

Neurorobotics is one of the most ambitious fields in robotics, driving integration of interdisciplinary data and knowledge. One of the most productive areas of interdisciplinary research in this area has been the implementation of biologically-inspired mechanisms in the development of autonomous systems. Specifically, enabling such systems to display adaptive behavior such as learning from good and bad outcomes, has been achieved by quantifying and understanding the neural mechanisms of the brain networks mediating adaptive behaviors in humans and animals. For example, associative learning from aversive or dangerous outcomes is crucial for an autonomous system, to avoid dangerous situations in the future. A body of neuroscience research has suggested that the neurocomputations in the human brain during associative learning involve re-shaping of sensory responses. The nature of these adaptive changes in sensory processing during learning however are not yet well enough understood to be readily implemented into on-board algorithms for robotics application. Toward this overall goal, we record the simultaneous electroencephalogram (EEG) and functional magnetic resonance imaging (fMRI), characterizing one candidate mechanism, i.e., large-scale brain oscillations. The present report examines the use of Functional Source Separation (FSS) as an optimization step in EEG-fMRI fusion that harnesses timing information to constrain the solutions that satisfy physiological assumptions. We applied this approach to the voxel-wise correlation of steady-state visual evoked potential (ssVEP) amplitude and blood oxygen level-dependent imaging (BOLD), across both time series. The results showed the benefit of FSS for the extraction of robust ssVEP signals during simultaneous EEG-fMRI recordings. Applied to data from a 3-phase aversive conditioning paradigm, the correlation maps across the three phases (habituation, acquisition, extinction) show converging results, notably major overlapping areas in both primary and extended visual cortical regions, including calcarine sulcus, lingual cortex, and cuneus. In addition, during the acquisition phase when aversive learning occurs, we observed additional correlations between ssVEP and BOLD in the anterior cingulate cortex (ACC) as well as the precuneus and superior temporal gyrus

Reference-free removal of EEG-fMRI ballistocardiogram artifacts with harmonic regression

Combining electroencephalogram (EEG) recording and functional magnetic resonance imaging (fMRI) offers the potential for imaging brain activity with high spatial and temporal resolution. This potential remains limited by the significant ballistocardiogram (BCG) artifacts induced in the EEG by cardiac pulsation-related head movement within the magnetic field. We model the BCG artifact using a harmonic basis, pose the artifact removal problem as a local harmonic regression analysis, and develop an efficient maximum likelihood algorithm to estimate and remove BCG artifacts. Our analysis paradigm accounts for time-frequency overlap between the BCG artifacts and neurophysiologic EEG signals, and tracks the spatiotemporal variations in both the artifact and the signal. We evaluate performance on: simulated oscillatory and evoked responses constructed with realistic artifacts; actual anesthesia-induced oscillatory recordings; and actual visual evoked potential recordings. In each case, the local harmonic regression analysis effectively removes the BCG artifacts, and recovers the neurophysiologic EEG signals. We further show that our algorithm outperforms commonly used reference-based and component analysis techniques, particularly in low SNR conditions, the presence of significant time-frequency overlap between the artifact and the signal, and/or large spatiotemporal variations in the BCG. Because our algorithm does not require reference signals and has low computational complexity, it offers a practical tool for removing BCG artifacts from EEG data recorded in combination with fMRI.National Institutes of Health (U.S.) (Award DP1-OD003646)National Institutes of Health (U.S.) (Award TR01-GM104948)National Institutes of Health (U.S.) (Grant R44NS071988)National Institute of Neurological Diseases and Stroke (U.S.) (Grant Grant R44NS071988

Analysis of electroencephalography signals collected in a magnetic resonance environment: characterisation of the ballistocardiographic artefact

L’acquisizione simultanea di segnali elettroencefalografici (EEG) e immagini di risonanza magnetica funzionale (fMRI) permette di investigare attivazioni cerebrali in modo non invasivo. La presenza del campo magnetico altera però in modo non trascurabile la qualità dei segnali EEG acquisiti. In particolare due artefatti sono stati individuati: l’artefatto da gradiente e l’artefatto da ballistocardiogramma (BCG). L’artefatto da BCG è legato all’attività cardiaca del soggetto, ed è caratterizzato da elevata variabilità tra un’occorrenza e l’altra in termini di ampiezza, forma d’onda e durata dell’artefatto. Differenti algoritmi sono stati implementati al fine di rimuoverlo, ma la rimozione completa rimane ancora un difficile obiettivo da raggiungere a causa della sua complessa natura. L’argomento della tesi riguarda l’analisi di segnali EEG acquisiti in ambiente di risonanza magnetica e la caratterizzazione dell’artefatto BCG. L’obiettivo è individuare ulteriori caratteristiche dell’artefatto che possano condurre al miglioramento dei precedenti metodi, o all’implementazione di nuovi. Con questa tesi abbiamo mostrato quali sono i motivi che causano la presenza di residui artefattuali nei segnali EEG processati con i metodi presenti in letteratura. Attraverso analisi statistica abbiamo riscontrato che occorrenze dell’artefatto BCG sono caratterizzate da un ritardo variabile rispetto al picco R sull’ECG, che nella nostra analisi rappresenta l’evento di riferimento nell’attività cardiaca. Abbiamo inoltre trovato che il ritardo R-BCG varia con la frequenza cardiaca. Le successive valutazioni riguardano i maggiori contributi all’artefatto BCG. Attraverso l’analisi alle componenti principali, sono stati individuati due contributi legati al fluire del sangue dal cuore verso il cervello e alla sua pulsatilità nei vasi principali dello scalpo

Dual array EEG-fMRI : An approach for motion artifact suppression in EEG recorded simultaneously with fMRI

Objective: Although simultaneous recording of EEG and MRI has gained increasing popularity in recent years, the extent of its clinical use remains limited by various technical challenges. Motion interference is one of the major challenges in EEG-fMRI. Here we present an approach which reduces its impact with the aid of an MR compatible dual-array EEG (daEEG) in which the EEG itself is used both as a brain signal recorder and a motion sensor. Methods: We implemented two arrays of EEG electrodes organized into two sets of nearly orthogonally intersecting wire bundles. The EEG was recorded using referential amplifiers inside a 3 T MR-scanner. Virtual bipolar measurements were taken both along bundles (creating a small wire loop and therefore minimizing artifact) and across bundles (creating a large wire loop and therefore maximizing artifact). Independent component analysis (ICA) was applied. The resulting ICA components were classified into brain signal and noise using three criteria: 1) degree of two-dimensional spatial correlation between ICA coefficients along bundles and across bundles; 2) amplitude along bundles vs. across bundles; 3) correlation with ECG. The components which passed the criteria set were transformed back to the channel space. Motion artifact suppression and the ability to detect interictal epileptic spikes following daEEG and Optimal Basis Set (OBS) procedures were compared in 10 patients with epilepsy. Results: The SNR achieved by daEEG was 11.05 +/- 3.10 and by OBS was 8.25 +/- 1.01 (p <0.00001). In 9 of 10 patients, more spikes were detected after daEEG than after OBS (p <0.05). Significance: daEEG improves signal quality in EEG-fMRI recordings, expanding its clinical and research potential. (C) 2016 Elsevier Inc. All rights reserved.Peer reviewe

EEG-assisted retrospective motion correction for fMRI: E-REMCOR

We propose a method for retrospective motion correction of fMRI data in simultaneous EEG-fMRI that employs the EEG array as a sensitive motion detector. EEG motion artifacts are used to generate motion regressors describing rotational head movements with millisecond temporal resolution. These regressors are utilized for slice-specific motion correction of unprocessed fMRI data. Performance of the method is demonstrated by correction of fMRI data from five patients with major depressive disorder, who exhibited head movements by 1-3 mm during a resting EEG-fMRI run. The fMRI datasets, corrected using eight to ten EEG-based motion regressors, show significant improvements in temporal SNR (TSNR) of fMRI time series, particularly in the frontal brain regions and near the surface of the brain. The TSNR improvements are as high as 50% for large brain areas in single-subject analysis and as high as 25% when the results are averaged across the subjects. Simultaneous application of the EEG-based motion correction and physiological noise correction by means of RETROICOR leads to average TSNR enhancements as high as 35% for large brain regions. These TSNR improvements are largely preserved after the subsequent fMRI volume registration and regression of fMRI motion parameters. The proposed EEG-assisted method of retrospective fMRI motion correction (referred to as E-REMCOR) can be used to improve quality of fMRI data with severe motion artifacts and to reduce spurious correlations between the EEG and fMRI data caused by head movements. It does not require any specialized equipment beyond the standard EEG-fMRI instrumentation and can be applied retrospectively to any existing EEG-fMRI data set.Comment: 19 pages, 10 figures, to appear in NeuroImag

Exploring the relative efficacy of motion artefact correction techniques for EEG data acquired during simultaneous fMRI

Simultaneous EEG-fMRI allows multi-parametric characterisation of brain function, in principle enabling a more complete understanding of brain responses; unfortunately the hostile MRI environment severely reduces EEG data quality. Simply eliminating data segments containing gross motion artefacts [MAs] (generated by movement of the EEG system and head in the MRI scanner’s static magnetic field) was previously believed sufficient. However recently the importance of removal of all MAs has been highlighted and new methods developed.A systematic comparison of the ability to remove MAs and retain underlying neuronal activity using different methods of MA detection and post-processing algorithms is needed to guide the neuroscience community. Using a head phantom, we recorded MAs while simultaneously monitoring the motion using three different approaches: Reference Layer Artefact Subtraction (RLAS), Moire Phase Tracker (MPT) markers, and Wire Loop Motion Sensors (WLMS). These EEG recordings were combined with EEG responses to simple visual tasks acquired on a subject outside the MRI environment. MAs were then corrected using the motion information collected with each of the methods combined with different analysis pipelines.All tested methods retained the neuronal signal. However, often the MA was not removed sufficiently to allow accurate detection of the underlying neuronal signal. We show that the MA is best corrected using the RLAS combined with post-processing using a multi-channel, recursive least squares (M-RLS) algorithm. This method needs to be developed further to enable practical utility; thus, WLMS combined with M-RLS currently provides the best compromise between EEG data quality and practicalities of motion detection