Information Extraction, Data Integration, and Uncertain Data Management: The State of The Art

Information Extraction, data Integration, and uncertain data management are different areas of research that got vast focus in the last two decades. Many researches tackled those areas of research individually. However, information extraction systems should have integrated with data integration methods to make use of the extracted information. Handling uncertainty in extraction and integration process is an important issue to enhance the quality of the data in such integrated systems. This article presents the state of the art of the mentioned areas of research and shows the common grounds and how to integrate information extraction and data integration under uncertainty management cover

Lifted rule injection for relation embeddings

Methods based on representation learning currently hold the state-of-the-art in many natural language processing and knowledge base inference tasks. Yet, a major challenge is how to efficiently incorporate commonsense knowledge into such models. A recent approach regularizes relation and entity representations by propositionalization of first-order logic rules. However, propositionalization does not scale beyond domains with only few entities and rules. In this paper we present a highly efficient method for incorporating implication rules into distributed representations for automated knowledge base construction. We map entity-tuple embeddings into an approximately Boolean space and encourage a partial ordering over relation embeddings based on implication rules mined from WordNet. Surprisingly, we find that the strong restriction of the entity-tuple embedding space does not hurt the expressiveness of the model and even acts as a regularizer that improves generalization. By incorporating few commonsense rules, we achieve an increase of 2 percentage points mean average precision over a matrix factorization baseline, while observing a negligible increase in runtime

Implementing a Portable Clinical NLP System with a Common Data Model - a Lisp Perspective

This paper presents a Lisp architecture for a portable NLP system, termed LAPNLP, for processing clinical notes. LAPNLP integrates multiple standard, customized and in-house developed NLP tools. Our system facilitates portability across different institutions and data systems by incorporating an enriched Common Data Model (CDM) to standardize necessary data elements. It utilizes UMLS to perform domain adaptation when integrating generic domain NLP tools. It also features stand-off annotations that are specified by positional reference to the original document. We built an interval tree based search engine to efficiently query and retrieve the stand-off annotations by specifying positional requirements. We also developed a utility to convert an inline annotation format to stand-off annotations to enable the reuse of clinical text datasets with inline annotations. We experimented with our system on several NLP facilitated tasks including computational phenotyping for lymphoma patients and semantic relation extraction for clinical notes. These experiments showcased the broader applicability and utility of LAPNLP.Comment: 6 pages, accepted by IEEE BIBM 2018 as regular pape

Open-Vocabulary Semantic Parsing with both Distributional Statistics and Formal Knowledge

Traditional semantic parsers map language onto compositional, executable queries in a fixed schema. This mapping allows them to effectively leverage the information contained in large, formal knowledge bases (KBs, e.g., Freebase) to answer questions, but it is also fundamentally limiting---these semantic parsers can only assign meaning to language that falls within the KB's manually-produced schema. Recently proposed methods for open vocabulary semantic parsing overcome this limitation by learning execution models for arbitrary language, essentially using a text corpus as a kind of knowledge base. However, all prior approaches to open vocabulary semantic parsing replace a formal KB with textual information, making no use of the KB in their models. We show how to combine the disparate representations used by these two approaches, presenting for the first time a semantic parser that (1) produces compositional, executable representations of language, (2) can successfully leverage the information contained in both a formal KB and a large corpus, and (3) is not limited to the schema of the underlying KB. We demonstrate significantly improved performance over state-of-the-art baselines on an open-domain natural language question answering task.Comment: Re-written abstract and intro, other minor changes throughout. This version published at AAAI 201