Improving Message Passing over Ethernet with I/OAT Copy Offload in Open-MX

International audienceOpen-MX is a new message passing layer implemented on top of the generic Ethernet stack of the Linux kernel. Open-MX works on all Ethernet hardware, but it suffers from expensive memory copy requirements on the receiver side due to the hardware's inability to deposit messages directly in the target application buffers. This article presents the implementation of an asynchronous memory copy offload in the Open-MX stack thanks to Intel I/O Acceleration Technology. The overlapping of large message fragment copies with the processing increases the receive throughput by 30% while reducing the CPU usage by up to 40%. It enables Open-MX to reach 10 gigabit/s Ethernet line rate for large messages. Open-MX large intra-node communication also benefits significantly from the I/OAT hardware since the performance of its one-copy-based local communication mechanism is almost doubled by using blocking I/OAT memory copies. By combining all these optimizations, the Open-MX large message performance on top of 10G hardware is now able to bridge the gap with the native Myrinet Express stack

High Throughput Intra-Node MPI Communication with Open-MX

International audienceThe increasing number of cores per node in high-performance computing requires an efficient intra-node MPI communication subsystem. Most existing MPI implementations rely on two copies across a shared memory-mapped file. Open-MX offers a single-copy mechanism that is tightly integrated in its regular communication stack, making it transparently available to the MX backend of many MPI layers. We describe this implementation and its offloaded copy backend using I/OAT hardware. Memory pinning requirements are then discussed, and overlapped pinning is introduced to enable the start of Open-MX intra-node data transfer earlier. Performance evaluation shows that this local communication stack performs better than MPICH2 and Open~MPI for large messages, reaching up to 70\,\% better throughput in micro-benchmarks when using I/OAT copy offload. Thanks to a single-copy being involved, the Open-MX intra-node communication throughput also does not heavily depend on cache sharing between processing cores, making these performance improvements easier to observe in real applications

NIC-assisted cache-efficient receive stack for message passing over Ethernet

International audienceHigh-speed networking in clusters usually relies on advanced hardware features in the NICs, such as zero-copy capability. Open-MX is a high-performance message passing stack tailored for regular Ethernet hardware without such capabilities. We present the addition of a multiqueue support in the Open-MX receive stack so that all incoming packets for the same process are handled on the same core. We then introduce the idea of binding the target end process near its dedicated receive queue. This model leads to a more cache-efficient receive stack for Open-MX. It also proves that very simple and stateless hardware features may have a significant impact on message passing performance over Ethernet. The implementation of this model in a firmware reveals that it may not be as efficient as some manually tuned micro-benchmarks. But our multiqueue receive stack generally performs better than the original single queue stack, especially on large communication patterns where multiple processes are involved and manual binding is difficult

High-Performance Message Passing over generic Ethernet Hardware with Open-MX

International audienceIn the last decade, cluster computing has become the most popular high-performance computing architecture. Although numerous technological innovations have been proposed to improve the interconnection of nodes, many clusters still rely on commodity Ethernet hardware to implement message passing within parallel applications. We present Open-MX, an open-source message passing stack over generic Ethernet. It offers the same abilities as the specialized Myrinet Express stack, without requiring dedicated support from the networking hardware. Open-MX works transparently in the most popular MPI implementations through its MX interface compatibility. It also enables interoperability between hosts running the specialized MX stack and generic Ethernet hosts. We detail how Open-MX copes with the inherent limitations of the Ethernet hardware to satisfy the requirements of message passing by applying an innovative copy offload model. Combined with a careful tuning of the fabric and of the MX wire protocol, Open-MX achieves better performance than TCP implementations, especially on 10 gigabit/s hardware