1,221 research outputs found
Educating the educators: Incorporating bioinformatics into biological science education in Malaysia
Bioinformatics can be defined as a fusion of computational and biological sciences. The urgency to process and analyse the deluge of data created by proteomics and genomics studies has caused bioinformatics to gain prominence and importance. However, its multidisciplinary nature has created a unique demand for specialist trained in both biology and computing. In this review, we described the components that constitute the bioinformatics field and distinctive education criteria that are required to produce individuals with bioinformatics training. This paper will also provide an introduction and overview of bioinformatics in Malaysia. The existing bioinformatics scenario in Malaysia was surveyed to gauge its advancement and to plan for future bioinformatics education strategies. For comparison, we surveyed methods and strategies used in education by other countries so that lessons can be learnt to further improve the implementation of bioinformatics in Malaysia. It is believed that accurate and sufficient steerage from the academia and industry will enable Malaysia to produce quality bioinformaticians in the future
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Computational biology: plus c'est la même chose, plus ça change
A report on the joint 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)/10th Annual European Conference on Computational Biology (ECCB) meetings and the 7th International Society for Computational Biology Student Council Symposium, Vienna, Austria, 15-19 July 2011
Lexical Adaptation of Link Grammar to the Biomedical Sublanguage: a Comparative Evaluation of Three Approaches
We study the adaptation of Link Grammar Parser to the biomedical sublanguage
with a focus on domain terms not found in a general parser lexicon. Using two
biomedical corpora, we implement and evaluate three approaches to addressing
unknown words: automatic lexicon expansion, the use of morphological clues, and
disambiguation using a part-of-speech tagger. We evaluate each approach
separately for its effect on parsing performance and consider combinations of
these approaches. In addition to a 45% increase in parsing efficiency, we find
that the best approach, incorporating information from a domain part-of-speech
tagger, offers a statistically signicant 10% relative decrease in error. The
adapted parser is available under an open-source license at
http://www.it.utu.fi/biolg
Highlights from the ISCB Student Council Symposium 2013
This report summarizes the scientific content and activities of the annual symposium organized by the Student Council of the International Society for Computational Biology (ISCB), held in conjunction with the Intelligent Systems for Molecular Biology (ISMB) / European Conference on Computational Biology (ECCB) conference in Berlin, Germany, on July 19, 2013
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