Real-Time Divisible Load Scheduling with Different Processor Available Times

Providing QoS and performance guarantees to arbitrarily divisible loads has become a significant problem for many cluster-based research computing facilities. While progress is being made in scheduling arbitrarily divisible loads, some of proposed approaches may cause Inserted Idle Times (IITs) that are detrimental to system performance. In this paper we propose a new approach that utilizes IITs and thus enhances the system performance. The novelty of our approach is that, to simplify the analysis, a homogenous system with IITs is transformed to an equivalent heterogeneous system, and that our algorithms can schedule real-time divisible loads with different processor available times. Intensive simulations show that the new approach outperforms the previous approach in all configurations. We also compare the performance of our algorithm to the current practice of manually splitting workloads by users. Simulation results validate the advantages of our approach

Parallelisation for data-intensive applications over peer-to-peer networks

In Data Intensive Computing, properties of the data that are the input for an application decide running performance in most cases. Those properties include the size of the data, the relationships inside data, and so forth. There is a class of data intensive applications (BLAST, SETI@home, Folding@Home and so on so forth) whose performances solely depend on the amount of input data. Another important characteristic of those applications is that the input data can be split into units and these units are not related to each other during the runs of the applications. This characteristic helps this class of data intensive applications to be parallelised in the way where the input data is split into units and application runs on different computer nodes for certain portion of the units. SETI@home and Folding@Home have been successfully parallelised over peer-to-peer networks. However, they suffer from the problems of single point of failure and poor scalability. In order to solve these problems, we choose BLAST as our example data intensive applications and parallelise BLAST over a fully distributed peer-to-peer network. BLAST is a popular bioinformatics toolset which can be used to compare two DNA sequences. The major usage of BLAST is searching a query of sequences inside a database for their similarities so as to identify whether they are new. When comparing single pair of sequences, BLAST is efficient. However, due to growing size of the databases, executing BLAST jobs locally produces prohibitively poor performance. Thus, methods for parallelising BLAST are sought. Traditional BLAST parallelisation approaches are all based on clusters. Clusters employ a number of computing nodes and high bandwidth interlinks between nodes. Cluster-based BLAST exhibits higher performance; nevertheless, clusters suffer from limited resources and scalability problems. Clusters are expensive, prohibitively so when the growth of the sequence database are taken into account. It involves high cost and complication when increasing the number of nodes to adapt to the growth of BLAST databases. Hence a Peer-to-Peer-based BLAST service is required. This thesis demonstrates our parallelisation of BLAST over Peer-to-Peer networks (termed ppBLAST), which utilises the free storage and computing resources in the Peer-to-Peer networks to complete BLAST jobs in parallel. In order to achieve the goal, we build three layers in ppBLAST each of which is responsible for particular functions. The bottom layer is a DHT infrastructure with the support of range queries. It provides efficient range-based lookup service and storage for BLAST tasks. The middle layer is the BitTorrent-based database distribution. The upper layer is the core of ppBLAST which schedules and dispatches task to peers. For each layer, we conduct comprehensive research and the achievements are presented in this thesis. For the DHT layer, we design and implement our DAST-DHT. We analyse balancing, maximum number of children and the accuracy of the range query. We also compare the DAST with other range query methodology and state that if the number of children is adjusted to more two, the performance of DAST overcomes others. For the BitTorrent-like database distribution layer, we investigate the relationship between the seeding strategies and the selfish leechers (freeriders and exploiters). We conclude that OSS works better than TSS in a normal situation

Real-Time Divisible Load Scheduling with Advance Reservation

Providing QoS and performance guarantees to arbitrarily di-visible loads has become a significant problem for many cluster-based research computing facilities. While progress is being made in scheduling arbitrarily divisible loads, previous ap-proaches have no support for advance reservations. However, with the emergence of Grid applications that require simulta-neous access to multi-site resources, supporting advance reser-vations in a cluster has become increasingly important. In this paper we propose a new divisible load real-time scheduling al-gorithm that supports advance reservations in a cluster. Our approach not only enforces the real-time agreement but also ad-dresses the under-utilization concerns raised by advance reser-vations. The impact of advance reservations on system perfor-mance is systematically studied. Simulation results show that, with the proposed algorithm and appropriate advance reserva-tions, the system performance could be maintained at the same level as the no reservation case.

Parallelisation for data-intensive applications over peer-to-peer networks

In Data Intensive Computing, properties of the data that are the input for an application decide running performance in most cases. Those properties include the size of the data, the relationships inside data, and so forth. There is a class of data intensive applications (BLAST, SETI@home, Folding@Home and so on so forth) whose performances solely depend on the amount of input data. Another important characteristic of those applications is that the input data can be split into units and these units are not related to each other during the runs of the applications. This characteristic helps this class of data intensive applications to be parallelised in the way where the input data is split into units and application runs on different computer nodes for certain portion of the units. SETI@home and Folding@Home have been successfully parallelised over peer-to-peer networks. However, they suffer from the problems of single point of failure and poor scalability. In order to solve these problems, we choose BLAST as our example data intensive applications and parallelise BLAST over a fully distributed peer-to-peer network. BLAST is a popular bioinformatics toolset which can be used to compare two DNA sequences. The major usage of BLAST is searching a query of sequences inside a database for their similarities so as to identify whether they are new. When comparing single pair of sequences, BLAST is efficient. However, due to growing size of the databases, executing BLAST jobs locally produces prohibitively poor performance. Thus, methods for parallelising BLAST are sought. Traditional BLAST parallelisation approaches are all based on clusters. Clusters employ a number of computing nodes and high bandwidth interlinks between nodes. Cluster-based BLAST exhibits higher performance; nevertheless, clusters suffer from limited resources and scalability problems. Clusters are expensive, prohibitively so when the growth of the sequence database are taken into account. It involves high cost and complication when increasing the number of nodes to adapt to the growth of BLAST databases. Hence a Peer-to-Peer-based BLAST service is required. This thesis demonstrates our parallelisation of BLAST over Peer-to-Peer networks (termed ppBLAST), which utilises the free storage and computing resources in the Peer-to-Peer networks to complete BLAST jobs in parallel. In order to achieve the goal, we build three layers in ppBLAST each of which is responsible for particular functions. The bottom layer is a DHT infrastructure with the support of range queries. It provides efficient range-based lookup service and storage for BLAST tasks. The middle layer is the BitTorrent-based database distribution. The upper layer is the core of ppBLAST which schedules and dispatches task to peers. For each layer, we conduct comprehensive research and the achievements are presented in this thesis. For the DHT layer, we design and implement our DAST-DHT. We analyse balancing, maximum number of children and the accuracy of the range query. We also compare the DAST with other range query methodology and state that if the number of children is adjusted to more two, the performance of DAST overcomes others. For the BitTorrent-like database distribution layer, we investigate the relationship between the seeding strategies and the selfish leechers (freeriders and exploiters). We conclude that OSS works better than TSS in a normal situation.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Performance-aware task scheduling in multi-core computers

Multi-core systems become more and more popular as they can satisfy the increasing computation capacity requirements of complex applications. Task scheduling strategy plays a key role in this vision and ensures that the task processing is both Quality-of-Service (QoS, in this thesis, refers to deadline) satisfied and energy-efficient. In this thesis, we develop task scheduling strategies for multi-core computing systems. We start by looking at two objectives of a multi-core computing system. The first objective aims at ensuring all tasks can satisfy their time constraints (i.e. deadline), while the second strives to minimize the overall energy consumption of the platform. We develop three power-aware scheduling strategies in virtualized systems managed by Xen. Comparing with the original scheduling strategy in Xen, these scheduling algorithms are able to reduce energy consumption without reducing the performance for the jobs. Then, we find that modelling the makespan of a task (before execution) accurately is very important for making scheduling decisions. Our studies show that the discrepancy between the assumption of (commonly used) sequential execution and the reality of time sharing execution may lead to inaccurate calculation of the task makespan. Thus, we investigate the impact of the time sharing execution on the task makespan, and propose the method to model and determine the makespan with the time-sharing execution. Thereafter, we extend our work to a more complex scenario: scheduling DAG applications for time sharing systems. Based on our time-sharing makespan model, we further develop the scheduling strategies for DAG jobs in time-sharing execution, which achieves more effective at task execution. Finally, as the resource interference also makes a big difference to the performance of co-running tasks in multi-core computers (which may further influence the scheduling decision making), we investigate the influential factors that impact on the performance when the tasks ii are co-running on a multicore computer and propose the machine learning-based prediction frameworks to predict the performance of the co-running tasks. The experimental results show that the techniques proposed in this thesis is effective

Hybrid performance-oriented scheduling of moldable jobs with QoS demands in multiclusters and grids

This paper addresses the dynamic scheduling of moldable jobs with QoS demands (soft-deadlines) in multiclusters. A moldable job can be run on a variable number of resources. Three metrics (over-deadline, makespan and idletime) are combined with weights to evaluate the scheduling performance. Two levels of performance optimisation are applied in the multicluster. At the multicluster level, a scheduler (which we call MUSCLE) allocates parallel jobs with high packing potential to the same cluster; MUSCLE also takes the jobs' QoS requirements into account and employs a heuristic to achieve performance balancing across the multicluster. At the single cluster level, an existing workload manager, called TITAN, utilizes a genetic algorithm to further improve the scheduling performance of the jobs allocated by MUSCLE. Extensive experimental studies are conducted to verify the effectiveness of the scheduling mechanism in MUSCLE. The results show that the comprehensive scheduling performance of parallel jobs is significantly improved across the multicluster

Hybrid Performance-Oriented Scheduling of Moldable Jobs with QoS Demands in Multiclusters and Grids

This paper addresses the dynamic scheduling of moldable jobs with QoS demands (soft-deadlines) in multiclusters. A moldable job can be run on a variable number of resources. Three metrics (over-deadline, makespan and idletime) are combined with weights to evaluate the scheduling performance. Two levels of performance optimisation are applied in the multicluster. At the multicluster level, a scheduler (which we call MUSCLE) allocates parallel jobs with high packing potential to the same cluster; MUSCLE also takes the jobs ' QoS requirements into account and employs a heuristic to achieve performance balancing across the multicluster. At the single cluster level, an existing workload manager, called TITAN, utilizes a genetic algorithm to further improve the scheduling performance of the jobs allocated by MUSCLE. Extensive experimental studies are conducted to verify the effectiveness of the scheduling mechanism in MUSCLE. The results show that the comprehensive scheduling performance of parallel jobs is significantly improved across the multicluster.