Statistical analysis of network data and evolution on GPUs: High-performance statistical computing

Network analysis typically involves as set of repetitive tasks that are particularly amenable to poor-man's parallelization. This is therefore an ideal application are for GPU architectures, which help to alleviate the tedium inherent to statistically sound analysis of network data. Here we will illustrate the use of GPUs in a range of applications, which include percolation processes on networks, the evolution of protein-protein interaction networks, and the fusion of different types of biomedical and disease data in the context of molecular interaction networks. We will pay particular attention to the numerical performance of different routines that are frequently invoked in network analysis problems. We conclude with a review over recent developments in the generation of random numbers that address the specific requirements posed by GPUs and high-performance computing needs

Macroservers: An Execution Model for DRAM Processor-In-Memory Arrays

The emergence of semiconductor fabrication technology allowing a tight coupling between high-density DRAM and CMOS logic on the same chip has led to the important new class of Processor-In-Memory (PIM) architectures. Newer developments provide powerful parallel processing capabilities on the chip, exploiting the facility to load wide words in single memory accesses and supporting complex address manipulations in the memory. Furthermore, large arrays of PIMs can be arranged into a massively parallel architecture. In this report, we describe an object-based programming model based on the notion of a macroserver. Macroservers encapsulate a set of variables and methods; threads, spawned by the activation of methods, operate asynchronously on the variables' state space. Data distributions provide a mechanism for mapping large data structures across the memory region of a macroserver, while work distributions allow explicit control of bindings between threads and data. Both data and work distributuions are first-class objects of the model, supporting the dynamic management of data and threads in memory. This offers the flexibility required for fully exploiting the processing power and memory bandwidth of a PIM array, in particular for irregular and adaptive applications. Thread synchronization is based on atomic methods, condition variables, and futures. A special type of lightweight macroserver allows the formulation of flexible scheduling strategies for the access to resources, using a monitor-like mechanism

An Effective Strategy for the Flexible Provisioning of Service Workflows

Recent advances in service-oriented frameworks and semantic Web technologies have enabled software agents to discover and invoke resources over large distributed systems, in order to meet their high-level objectives. However, most work has failed to acknowledge that such systems are complex and dynamic multi-agent systems, where service providers act autonomously and follow their own decision-making procedures. Hence, the behaviour of these providers is inherently uncertain - services may fail or take uncertain amounts of time to complete. In this work, we address this uncertainty and take an agent-oriented approach to the problem of provisioning service providers for the constituent tasks of abstract workflows. Specifically, we describe an algorithm that uses redundancy to deal with unreliable providers, and we demonstrate that it achieves an 8-14% improvement in average utility over previous work, while performing up to 6 times as well as approaches that do not consider service uncertainty. We also show that our algorithm performs well in the presence of inaccurate service performance information