Chinese named entity recognition using lexicalized HMMs

This paper presents a lexicalized HMM-based approach to Chinese named entity recognition (NER). To tackle the problem of unknown words, we unify unknown word identification and NER as a single tagging task on a sequence of known words. To do this, we first employ a known-word bigram-based model to segment a sentence into a sequence of known words, and then apply the uniformly lexicalized HMMs to assign each known word a proper hybrid tag that indicates its pattern in forming an entity and the category of the formed entity. Our system is able to integrate both the internal formation patterns and the surrounding contextual clues for NER under the framework of HMMs. As a result, the performance of the system can be improved without losing its efficiency in training and tagging. We have tested our system using different public corpora. The results show that lexicalized HMMs can substantially improve NER performance over standard HMMs. The results also indicate that character-based tagging (viz. the tagging based on pure single-character words) is comparable to and can even outperform the relevant known-word based tagging when a lexicalization technique is applied.postprin

PersoNER: Persian named-entity recognition

© 1963-2018 ACL. Named-Entity Recognition (NER) is still a challenging task for languages with low digital resources. The main difficulties arise from the scarcity of annotated corpora and the consequent problematic training of an effective NER pipeline. To abridge this gap, in this paper we target the Persian language that is spoken by a population of over a hundred million people world-wide. We first present and provide ArmanPerosNERCorpus, the first manually-annotated Persian NER corpus. Then, we introduce PersoNER, an NER pipeline for Persian that leverages a word embedding and a sequential max-margin classifier. The experimental results show that the proposed approach is capable of achieving interesting MUC7 and CoNNL scores while outperforming two alternatives based on a CRF and a recurrent neural network

Mining Adverse Drug Reactions from online healthcare forums using Hidden Markov Model

Background Adverse Drug Reactions are one of the leading causes of injury or death among patients undergoing medical treatments. Not all Adverse Drug Reactions are identified before a drug is made available in the market. Current post-marketing drug surveillance methods, which are based purely on voluntary spontaneous reports, are unable to provide the early indications necessary to prevent the occurrence of such injuries or fatalities. The objective of this research is to extract reports of adverse drug side-effects from messages in online healthcare forums and use them as early indicators to assist in post-marketing drug surveillance. Methods We treat the task of extracting adverse side-effects of drugs from healthcare forum messages as a sequence labeling problem and present a Hidden Markov Model(HMM) based Text Mining system that can be used to classify a message as containing drug side-effect information and then extract the adverse side-effect mentions from it. A manually annotated dataset from http://www.medications.comis used in the training and validation of the HMM based Text Mining system. Results A 10-fold cross-validation on the manually annotated dataset yielded on average an F-Score of 0.76 from the HMM Classifier, in comparison to 0.575 from the Baseline classifier. Without the Plain Text Filter component as a part of the Text Processing module, the F-Score of the HMM Classifier was reduced to 0.378 on average, while absence of the HTML Filter component was found to have no impact. Reducing the Drug names dictionary size by half, on average reduced the F-Score of the HMM Classifier to 0.359, while a similar reduction to the side-effects dictionary yielded an F-Score of 0.651 on average. Adverse side-effects mined from http://www.medications.comand http://www.steadyhealth.comwere found to match the Adverse Drug Reactions on the Drug Package Labels of several drugs. In addition, some novel adverse side-effects, which can be potential Adverse Drug Reactions, were also identified. Conclusions The results from the HMM based Text Miner are encouraging to pursue further enhancements to this approach. The mined novel side-effects can act as early indicators for health authorities to help focus their efforts in post-marketing drug surveillance.The authors would like to acknowledge the support from National Science Foundation awards IIS-0644366 and OIA-1028098, and KU General Research Fund GRF-2301677