Segmentation hiérarchique de maillage 3D à partir des dynamiques de contour

La segmentation de maillage 3D est un problème fondamental en synthèse d'image et est devenu un enjeu important pour de nombreuses applications. Cet article introduit une nouvelle méthode de segmentation hiérarchique basée sur la ligne de partage des eaux (LPE), les cascades et les dynamiques de contour. La LPE génère une première partition composée de petits patchs surfaciques ; les dynamiques de contour offrent une bonne caractérisation des frontières et les cascades mettent à disposition plusieurs niveaux de segmentation pour l'utilisateur. Le procédé de fusion hiérarchique basé sur les cascades génère un arbre qui contient plusieurs schémas de segmentation ; l'utilisateur a ainsi la possibilité de parcourir facilement chacun des niveaux de segmentation contenus dans cet arbre pour sélectionner le plus adapté à son application

Identifying Components in 3D Density Maps of Protein Nanomachines by Multi-scale Segmentation

Segmentation of density maps obtained using cryo-electron microscopy (cryo-EM) is a challenging task, and is typically accomplished by time-intensive interactive methods. The goal of segmentation is to identify the regions inside the density map that correspond to individual components. We present a multi-scale segmentation method for accomplishing this task that requires very little user interaction. The method uses the concept of scale space, which is created by convolution of the input density map with a Gaussian filter. The latter process smoothes the density map. The standard deviation of the Gaussian filter is varied, with smaller values corresponding to finer scales and larger values to coarser scales. Each of the maps at different scales is segmented using the watershed method, which is very efficient, completely automatic, and does not require the specification of seed points. Some detail is lost in the smoothing process. A sharpening process reintroduces detail into the segmentation at the coarsest scale by using the segmentations at the finer scales. We apply the method to simulated density maps, where the exact segmentation (or ground truth) is known, and rigorously evaluate the accuracy of the resulting segmentations

Scene Parsing with Multiscale Feature Learning, Purity Trees, and Optimal Covers

Scene parsing, or semantic segmentation, consists in labeling each pixel in an image with the category of the object it belongs to. It is a challenging task that involves the simultaneous detection, segmentation and recognition of all the objects in the image. The scene parsing method proposed here starts by computing a tree of segments from a graph of pixel dissimilarities. Simultaneously, a set of dense feature vectors is computed which encodes regions of multiple sizes centered on each pixel. The feature extractor is a multiscale convolutional network trained from raw pixels. The feature vectors associated with the segments covered by each node in the tree are aggregated and fed to a classifier which produces an estimate of the distribution of object categories contained in the segment. A subset of tree nodes that cover the image are then selected so as to maximize the average "purity" of the class distributions, hence maximizing the overall likelihood that each segment will contain a single object. The convolutional network feature extractor is trained end-to-end from raw pixels, alleviating the need for engineered features. After training, the system is parameter free. The system yields record accuracies on the Stanford Background Dataset (8 classes), the Sift Flow Dataset (33 classes) and the Barcelona Dataset (170 classes) while being an order of magnitude faster than competing approaches, producing a 320 \times 240 image labeling in less than 1 second.Comment: 9 pages, 4 figures - Published in 29th International Conference on Machine Learning (ICML 2012), Jun 2012, Edinburgh, United Kingdo

AN ENHANCED TIBIA FRACTURE DETECTION TOOL USING IMAGE PROCESSING AND CLASSIFICATION FUSION TECHNIQUES IN X-RAY IMAGES

Automatic detection of fractures from x-ray images is considered as an important process in medical image analysis by both orthopaedic and radiologic point of view. This paper proposes a fusion-classification technique for automatic fracture detection from long bones, in particular the leg bones (Tibia bones). The proposed system has four steps, namely, preprocessing, segmentation, feature extraction and bone detect ion, which uses an amalgamation of image processing techniques for successful detection of fractures. Three classifiers, Feed Forward Back Propagation Neural Networks (BPNN), Support Vector Machine Classifiers (SVM) and NaEF;ve Bayes Classifiers (NB) are used during fusion classification. The results from various experiments prove that the proposed system is shows significant improvement in terms of detection rate and speed of classification

Multi-stage Multi-recursive-input Fully Convolutional Networks for Neuronal Boundary Detection

In the field of connectomics, neuroscientists seek to identify cortical connectivity comprehensively. Neuronal boundary detection from the Electron Microscopy (EM) images is often done to assist the automatic reconstruction of neuronal circuit. But the segmentation of EM images is a challenging problem, as it requires the detector to be able to detect both filament-like thin and blob-like thick membrane, while suppressing the ambiguous intracellular structure. In this paper, we propose multi-stage multi-recursive-input fully convolutional networks to address this problem. The multiple recursive inputs for one stage, i.e., the multiple side outputs with different receptive field sizes learned from the lower stage, provide multi-scale contextual boundary information for the consecutive learning. This design is biologically-plausible, as it likes a human visual system to compare different possible segmentation solutions to address the ambiguous boundary issue. Our multi-stage networks are trained end-to-end. It achieves promising results on two public available EM segmentation datasets, the mouse piriform cortex dataset and the ISBI 2012 EM dataset.Comment: Accepted by ICCV201

Visually significant dynamics for watershed segmentation

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