Coding for Parallel Channels: Gallager Bounds for Binary Linear Codes with Applications to Repeat-Accumulate Codes and Variations

This paper is focused on the performance analysis of binary linear block codes (or ensembles) whose transmission takes place over independent and memoryless parallel channels. New upper bounds on the maximum-likelihood (ML) decoding error probability are derived. These bounds are applied to various ensembles of turbo-like codes, focusing especially on repeat-accumulate codes and their recent variations which possess low encoding and decoding complexity and exhibit remarkable performance under iterative decoding. The framework of the second version of the Duman and Salehi (DS2) bounds is generalized to the case of parallel channels, along with the derivation of their optimized tilting measures. The connection between the generalized DS2 and the 1961 Gallager bounds, addressed by Divsalar and by Sason and Shamai for a single channel, is explored in the case of an arbitrary number of independent parallel channels. The generalization of the DS2 bound for parallel channels enables to re-derive specific bounds which were originally derived by Liu et al. as special cases of the Gallager bound. In the asymptotic case where we let the block length tend to infinity, the new bounds are used to obtain improved inner bounds on the attainable channel regions under ML decoding. The tightness of the new bounds for independent parallel channels is exemplified for structured ensembles of turbo-like codes. The improved bounds with their optimized tilting measures show, irrespectively of the block length of the codes, an improvement over the union bound and other previously reported bounds for independent parallel channels; this improvement is especially pronounced for moderate to large block lengths.Comment: Submitted to IEEE Trans. on Information Theory, June 2006 (57 pages, 9 figures

Comparing and Combining Lexicase Selection and Novelty Search

Lexicase selection and novelty search, two parent selection methods used in evolutionary computation, emphasize exploring widely in the search space more than traditional methods such as tournament selection. However, lexicase selection is not explicitly driven to select for novelty in the population, and novelty search suffers from lack of direction toward a goal, especially in unconstrained, highly-dimensional spaces. We combine the strengths of lexicase selection and novelty search by creating a novelty score for each test case, and adding those novelty scores to the normal error values used in lexicase selection. We use this new novelty-lexicase selection to solve automatic program synthesis problems, and find it significantly outperforms both novelty search and lexicase selection. Additionally, we find that novelty search has very little success in the problem domain of program synthesis. We explore the effects of each of these methods on population diversity and long-term problem solving performance, and give evidence to support the hypothesis that novelty-lexicase selection resists converging to local optima better than lexicase selection

Satisfiability, sequence niches, and molecular codes in cellular signaling

Biological information processing as implemented by regulatory and signaling networks in living cells requires sufficient specificity of molecular interaction to distinguish signals from one another, but much of regulation and signaling involves somewhat fuzzy and promiscuous recognition of molecular sequences and structures, which can leave systems vulnerable to crosstalk. This paper examines a simple computational model of protein-protein interactions which reveals both a sharp onset of crosstalk and a fragmentation of the neutral network of viable solutions as more proteins compete for regions of sequence space, revealing intrinsic limits to reliable signaling in the face of promiscuity. These results suggest connections to both phase transitions in constraint satisfaction problems and coding theory bounds on the size of communication codes

Counterfactual Risk Minimization: Learning from Logged Bandit Feedback

We develop a learning principle and an efficient algorithm for batch learning from logged bandit feedback. This learning setting is ubiquitous in online systems (e.g., ad placement, web search, recommendation), where an algorithm makes a prediction (e.g., ad ranking) for a given input (e.g., query) and observes bandit feedback (e.g., user clicks on presented ads). We first address the counterfactual nature of the learning problem through propensity scoring. Next, we prove generalization error bounds that account for the variance of the propensity-weighted empirical risk estimator. These constructive bounds give rise to the Counterfactual Risk Minimization (CRM) principle. We show how CRM can be used to derive a new learning method -- called Policy Optimizer for Exponential Models (POEM) -- for learning stochastic linear rules for structured output prediction. We present a decomposition of the POEM objective that enables efficient stochastic gradient optimization. POEM is evaluated on several multi-label classification problems showing substantially improved robustness and generalization performance compared to the state-of-the-art.Comment: 10 page

Complex networks in climate dynamics - Comparing linear and nonlinear network construction methods

Complex network theory provides a powerful framework to statistically investigate the topology of local and non-local statistical interrelationships, i.e. teleconnections, in the climate system. Climate networks constructed from the same global climatological data set using the linear Pearson correlation coefficient or the nonlinear mutual information as a measure of dynamical similarity between regions, are compared systematically on local, mesoscopic and global topological scales. A high degree of similarity is observed on the local and mesoscopic topological scales for surface air temperature fields taken from AOGCM and reanalysis data sets. We find larger differences on the global scale, particularly in the betweenness centrality field. The global scale view on climate networks obtained using mutual information offers promising new perspectives for detecting network structures based on nonlinear physical processes in the climate system.Comment: 24 pages, 10 figure