Theoretically Efficient Parallel Graph Algorithms Can Be Fast and Scalable

There has been significant recent interest in parallel graph processing due to the need to quickly analyze the large graphs available today. Many graph codes have been designed for distributed memory or external memory. However, today even the largest publicly-available real-world graph (the Hyperlink Web graph with over 3.5 billion vertices and 128 billion edges) can fit in the memory of a single commodity multicore server. Nevertheless, most experimental work in the literature report results on much smaller graphs, and the ones for the Hyperlink graph use distributed or external memory. Therefore, it is natural to ask whether we can efficiently solve a broad class of graph problems on this graph in memory. This paper shows that theoretically-efficient parallel graph algorithms can scale to the largest publicly-available graphs using a single machine with a terabyte of RAM, processing them in minutes. We give implementations of theoretically-efficient parallel algorithms for 20 important graph problems. We also present the optimizations and techniques that we used in our implementations, which were crucial in enabling us to process these large graphs quickly. We show that the running times of our implementations outperform existing state-of-the-art implementations on the largest real-world graphs. For many of the problems that we consider, this is the first time they have been solved on graphs at this scale. We have made the implementations developed in this work publicly-available as the Graph-Based Benchmark Suite (GBBS).Comment: This is the full version of the paper appearing in the ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), 201

Space and Time Efficient Parallel Graph Decomposition, Clustering, and Diameter Approximation

We develop a novel parallel decomposition strategy for unweighted, undirected graphs, based on growing disjoint connected clusters from batches of centers progressively selected from yet uncovered nodes. With respect to similar previous decompositions, our strategy exercises a tighter control on both the number of clusters and their maximum radius. We present two important applications of our parallel graph decomposition: (1) $k$-center clustering approximation; and (2) diameter approximation. In both cases, we obtain algorithms which feature a polylogarithmic approximation factor and are amenable to a distributed implementation that is geared for massive (long-diameter) graphs. The total space needed for the computation is linear in the problem size, and the parallel depth is substantially sublinear in the diameter for graphs with low doubling dimension. To the best of our knowledge, ours are the first parallel approximations for these problems which achieve sub-diameter parallel time, for a relevant class of graphs, using only linear space. Besides the theoretical guarantees, our algorithms allow for a very simple implementation on clustered architectures: we report on extensive experiments which demonstrate their effectiveness and efficiency on large graphs as compared to alternative known approaches.Comment: 14 page

Fast Shortest Path Distance Estimation in Large Networks

We study the problem of preprocessing a large graph so that point-to-point shortest-path queries can be answered very fast. Computing shortest paths is a well studied problem, but exact algorithms do not scale to huge graphs encountered on the web, social networks, and other applications. In this paper we focus on approximate methods for distance estimation, in particular using landmark-based distance indexing. This approach involves selecting a subset of nodes as landmarks and computing (offline) the distances from each node in the graph to those landmarks. At runtime, when the distance between a pair of nodes is needed, we can estimate it quickly by combining the precomputed distances of the two nodes to the landmarks. We prove that selecting the optimal set of landmarks is an NP-hard problem, and thus heuristic solutions need to be employed. Given a budget of memory for the index, which translates directly into a budget of landmarks, different landmark selection strategies can yield dramatically different results in terms of accuracy. A number of simple methods that scale well to large graphs are therefore developed and experimentally compared. The simplest methods choose central nodes of the graph, while the more elaborate ones select central nodes that are also far away from one another. The efficiency of the suggested techniques is tested experimentally using five different real world graphs with millions of edges; for a given accuracy, they require as much as 250 times less space than the current approach in the literature which considers selecting landmarks at random. Finally, we study applications of our method in two problems arising naturally in large-scale networks, namely, social search and community detection.Yahoo! Research (internship

04301 Abstracts Collection -- Cache-Oblivious and Cache-Aware Algorithms

The Dagstuhl Seminar 04301 ``Cache-Oblivious and Cache-Aware Algorithms\u27\u27 was held in the International Conference and Research Center (IBFI), Schloss Dagstuhl, from 18.07.2004 to 23.07.2004. During the seminar, several participants presented their current research, and ongoing work and open problems were discussed. Abstracts of the presentations given during the seminar as well as abstracts of seminar results and ideas are put together in this paper. The first section describes the seminar topics and goals in general. Links to extended abstracts or full papers are provided, if available

Exact Distance Oracles for Planar Graphs

We present new and improved data structures that answer exact node-to-node distance queries in planar graphs. Such data structures are also known as distance oracles. For any directed planar graph on n nodes with non-negative lengths we obtain the following: * Given a desired space allocation $S\in[n\lg\lg n,n^2]$, we show how to construct in $\tilde O(S)$ time a data structure of size $O(S)$ that answers distance queries in $\tilde O(n/\sqrt S)$ time per query. As a consequence, we obtain an improvement over the fastest algorithm for k-many distances in planar graphs whenever $k\in[\sqrt n,n)$. * We provide a linear-space exact distance oracle for planar graphs with query time $O(n^{1/2+eps})$ for any constant eps>0. This is the first such data structure with provable sublinear query time. * For edge lengths at least one, we provide an exact distance oracle of space $\tilde O(n)$ such that for any pair of nodes at distance D the query time is $\tilde O(min {D,\sqrt n})$. Comparable query performance had been observed experimentally but has never been explained theoretically. Our data structures are based on the following new tool: given a non-self-crossing cycle C with $c = O(\sqrt n)$ nodes, we can preprocess G in $\tilde O(n)$ time to produce a data structure of size $O(n \lg\lg c)$ that can answer the following queries in $\tilde O(c)$ time: for a query node u, output the distance from u to all the nodes of C. This data structure builds on and extends a related data structure of Klein (SODA'05), which reports distances to the boundary of a face, rather than a cycle. The best distance oracles for planar graphs until the current work are due to Cabello (SODA'06), Djidjev (WG'96), and Fakcharoenphol and Rao (FOCS'01). For $\sigma\in(1,4/3)$ and space $S=n^\sigma$, we essentially improve the query time from $n^2/S$ to $\sqrt{n^2/S}$.Comment: To appear in the proceedings of the 23rd ACM-SIAM Symposium on Discrete Algorithms, SODA 201

Efficient Algorithms and Data Structures for Massive Data Sets

For many algorithmic problems, traditional algorithms that optimise on the number of instructions executed prove expensive on I/Os. Novel and very different design techniques, when applied to these problems, can produce algorithms that are I/O efficient. This thesis adds to the growing chorus of such results. The computational models we use are the external memory model and the W-Stream model. On the external memory model, we obtain the following results. (1) An I/O efficient algorithm for computing minimum spanning trees of graphs that improves on the performance of the best known algorithm. (2) The first external memory version of soft heap, an approximate meldable priority queue. (3) Hard heap, the first meldable external memory priority queue that matches the amortised I/O performance of the known external memory priority queues, while allowing a meld operation at the same amortised cost. (4) I/O efficient exact, approximate and randomised algorithms for the minimum cut problem, which has not been explored before on the external memory model. (5) Some lower and upper bounds on I/Os for interval graphs. On the W-Stream model, we obtain the following results. (1) Algorithms for various tree problems and list ranking that match the performance of the best known algorithms and are easier to implement than them. (2) Pass efficient algorithms for sorting, and the maximal independent set problems, that improve on the best known algorithms. (3) Pass efficient algorithms for the graphs problems of finding vertex-colouring, approximate single source shortest paths, maximal matching, and approximate weighted vertex cover. (4) Lower bounds on passes for list ranking and maximal matching. We propose two variants of the W-Stream model, and design algorithms for the maximal independent set, vertex-colouring, and planar graph single source shortest paths problems on those models.Comment: PhD Thesis (144 pages

A Practical Parallel Algorithm for Diameter Approximation of Massive Weighted Graphs

We present a space and time efficient practical parallel algorithm for approximating the diameter of massive weighted undirected graphs on distributed platforms supporting a MapReduce-like abstraction. The core of the algorithm is a weighted graph decomposition strategy generating disjoint clusters of bounded weighted radius. Theoretically, our algorithm uses linear space and yields a polylogarithmic approximation guarantee; moreover, for important practical classes of graphs, it runs in a number of rounds asymptotically smaller than those required by the natural approximation provided by the state-of-the-art $\Delta$-stepping SSSP algorithm, which is its only practical linear-space competitor in the aforementioned computational scenario. We complement our theoretical findings with an extensive experimental analysis on large benchmark graphs, which demonstrates that our algorithm attains substantial improvements on a number of key performance indicators with respect to the aforementioned competitor, while featuring a similar approximation ratio (a small constant less than 1.4, as opposed to the polylogarithmic theoretical bound)