A Data Transformation System for Biological Data Sources

Scientific data of importance to biologists in the Human Genome Project resides not only in conventional databases, but in structured files maintained in a number of different formats (e.g. ASN.1 and ACE) as well a.s sequence analysis packages (e.g. BLAST and FASTA). These formats and packages contain a number of data types not found in conventional databases, such as lists and variants, and may be deeply nested. We present in this paper techniques for querying and transforming such data, and illustrate their use in a prototype system developed in conjunction with the Human Genome Center for Chromosome 22. We also describe optimizations performed by the system, a crucial issue for bulk data

Implanting Life-Cycle Privacy Policies in a Context Database

Ambient intelligence (AmI) environments continuously monitor surrounding individuals' context (e.g., location, activity, etc.) to make existing applications smarter, i.e., make decision without requiring user interaction. Such AmI smartness ability is tightly coupled to quantity and quality of the available (past and present) context. However, context is often linked to an individual (e.g., location of a given person) and as such falls under privacy directives. The goal of this paper is to enable the difficult wedding of privacy (automatically fulfilling users' privacy whishes) and smartness in the AmI. interestingly, privacy requirements in the AmI are different from traditional environments, where systems usually manage durable data (e.g., medical or banking information), collected and updated trustfully either by the donor herself, her doctor, or an employee of her bank. Therefore, proper information disclosure to third parties constitutes a major privacy concern in the traditional studies

Semantic data mining and linked data for a recommender system in the AEC industry

Even though it can provide design teams with valuable performance insights and enhance decision-making, monitored building data is rarely reused in an effective feedback loop from operation to design. Data mining allows users to obtain such insights from the large datasets generated throughout the building life cycle. Furthermore, semantic web technologies allow to formally represent the built environment and retrieve knowledge in response to domain-specific requirements. Both approaches have independently established themselves as powerful aids in decision-making. Combining them can enrich data mining processes with domain knowledge and facilitate knowledge discovery, representation and reuse. In this article, we look into the available data mining techniques and investigate to what extent they can be fused with semantic web technologies to provide recommendations to the end user in performance-oriented design. We demonstrate an initial implementation of a linked data-based system for generation of recommendations

Complexity of Inconsistency-Tolerant Query Answering in Datalog+/- under Cardinality-Based Repairs

Querying inconsistent ontological knowledge bases is an important problem in practice, for which several inconsistency-tolerant semantics have been proposed. In these semantics, the input database is erroneous, and a repair is a maximally consistent database subset. Different notions of maximality (such as subset and cardinality maximality) have been considered. In this paper, we give a precise picture of the computational complexity of inconsistency-tolerant query answering in a wide range of Datalog+/– languages under the cardinality-based versions of three prominent repair semantic