Global Thresholding and Multiple Pass Parsing

We present a variation on classic beam thresholding techniques that is up to an order of magnitude faster than the traditional method, at the same performance level. We also present a new thresholding technique, global thresholding, which, combined with the new beam thresholding, gives an additional factor of two improvement, and a novel technique, multiple pass parsing, that can be combined with the others to yield yet another 50% improvement. We use a new search algorithm to simultaneously optimize the thresholding parameters of the various algorithms.Comment: Fixed latex errors; fixed minor errors in published versio

Parameters identification of unknown delayed genetic regulatory networks by a switching particle swarm optimization algorithm

The official published version can be found at the link below.This paper presents a novel particle swarm optimization (PSO) algorithm based on Markov chains and competitive penalized method. Such an algorithm is developed to solve global optimization problems with applications in identifying unknown parameters of a class of genetic regulatory networks (GRNs). By using an evolutionary factor, a new switching PSO (SPSO) algorithm is first proposed and analyzed, where the velocity updating equation jumps from one mode to another according to a Markov chain, and acceleration coefficients are dependent on mode switching. Furthermore, a leader competitive penalized multi-learning approach (LCPMLA) is introduced to improve the global search ability and refine the convergent solutions. The LCPMLA can automatically choose search strategy using a learning and penalizing mechanism. The presented SPSO algorithm is compared with some well-known PSO algorithms in the experiments. It is shown that the SPSO algorithm has faster local convergence speed, higher accuracy and algorithm reliability, resulting in better balance between the global and local searching of the algorithm, and thus generating good performance. Finally, we utilize the presented SPSO algorithm to identify not only the unknown parameters but also the coupling topology and time-delay of a class of GRNs.This research was partially supported by the National Natural Science Foundation of PR China (Grant No. 60874113), the Research Fund for the Doctoral Program of Higher Education (Grant No. 200802550007), the Key Creative Project of Shanghai Education Community (Grant No. 09ZZ66), the Key Foundation Project of Shanghai (Grant No. 09JC1400700), the Engineering and Physical Sciences Research Council EPSRC of the UK under Grant No. GR/S27658/01, the International Science and Technology Cooperation Project of China under Grant No. 2009DFA32050, an International Joint Project sponsored by the Royal Society of the UK, and the Alexander von Humboldt Foundation of Germany

Semistochastic Quadratic Bound Methods

Partition functions arise in a variety of settings, including conditional random fields, logistic regression, and latent gaussian models. In this paper, we consider semistochastic quadratic bound (SQB) methods for maximum likelihood inference based on partition function optimization. Batch methods based on the quadratic bound were recently proposed for this class of problems, and performed favorably in comparison to state-of-the-art techniques. Semistochastic methods fall in between batch algorithms, which use all the data, and stochastic gradient type methods, which use small random selections at each iteration. We build semistochastic quadratic bound-based methods, and prove both global convergence (to a stationary point) under very weak assumptions, and linear convergence rate under stronger assumptions on the objective. To make the proposed methods faster and more stable, we consider inexact subproblem minimization and batch-size selection schemes. The efficacy of SQB methods is demonstrated via comparison with several state-of-the-art techniques on commonly used datasets.Comment: 11 pages, 1 figur

A comprehensive literature classification of simulation optimisation methods

Simulation Optimization (SO) provides a structured approach to the system design and configuration when analytical expressions for input/output relationships are unavailable. Several excellent surveys have been written on this topic. Each survey concentrates on only few classification criteria. This paper presents a literature survey with all classification criteria on techniques for SO according to the problem of characteristics such as shape of the response surface (global as compared to local optimization), objective functions (single or multiple objectives) and parameter spaces (discrete or continuous parameters). The survey focuses specifically on the SO problem that involves single per-formance measureSimulation Optimization, classification methods, literature survey

Controller design for synchronization of an array of delayed neural networks using a controllable

This is the post-print version of the Article - Copyright @ 2011 ElsevierIn this paper, a controllable probabilistic particle swarm optimization (CPPSO) algorithm is introduced based on Bernoulli stochastic variables and a competitive penalized method. The CPPSO algorithm is proposed to solve optimization problems and is then applied to design the memoryless feedback controller, which is used in the synchronization of an array of delayed neural networks (DNNs). The learning strategies occur in a random way governed by Bernoulli stochastic variables. The expectations of Bernoulli stochastic variables are automatically updated by the search environment. The proposed method not only keeps the diversity of the swarm, but also maintains the rapid convergence of the CPPSO algorithm according to the competitive penalized mechanism. In addition, the convergence rate is improved because the inertia weight of each particle is automatically computed according to the feedback of fitness value. The efficiency of the proposed CPPSO algorithm is demonstrated by comparing it with some well-known PSO algorithms on benchmark test functions with and without rotations. In the end, the proposed CPPSO algorithm is used to design the controller for the synchronization of an array of continuous-time delayed neural networks.This research was partially supported by the National Natural Science Foundation of PR China (Grant No 60874113), the Research Fund for the Doctoral Program of Higher Education (Grant No 200802550007), the Key Creative Project of Shanghai Education Community (Grant No 09ZZ66), the Key Foundation Project of Shanghai(Grant No 09JC1400700), the Engineering and Physical Sciences Research Council EPSRC of the U.K. under Grant No. GR/S27658/01, an International Joint Project sponsored by the Royal Society of the U.K., and the Alexander von Humboldt Foundation of Germany