Ontology-Based MEDLINE Document Classification

An increasing and overwhelming amount of biomedical information is available in the research literature mainly in the form of free-text. Biologists need tools that automate their information search and deal with the high volume and ambiguity of free-text. Ontologies can help automatic information processing by providing standard concepts and information about the relationships between concepts. The Medical Subject Headings (MeSH) ontology is already available and used by MEDLINE indexers to annotate the conceptual content of biomedical articles. This paper presents a domain-independent method that uses the MeSH ontology inter-concept relationships to extend the existing MeSH-based representation of MEDLINE documents. The extension method is evaluated within a document triage task organized by the Genomics track of the 2005 Text REtrieval Conference (TREC). Our method for extending the representation of documents leads to an improvement of 17% over a non-extended baseline in terms of normalized utility, the metric defined for the task. The SVMlight software is used to classify documents

Discovering information flow using a high dimensional conceptual space

This paper presents an informational inference mechanism realized via the use of a high dimensional conceptual space. More specifically, we claim to have operationalized important aspects of G?rdenforss recent three-level cognitive model. The connectionist level is primed with the Hyperspace Analogue to Language (HAL) algorithm which produces vector representations for use at the conceptual level. We show how inference at the symbolic level can be implemented by employing Barwise and Seligmans theory of information flow. This article also features heuristics for enhancing HAL-based representations via the use of quality properties, determining concept inclusion and computing concept composition. The worth of these heuristics in underpinning informational inference are demonstrated via a series of experiments. These experiments, though small in scale, show that informational inference proposed in this article has a very different character to the semantic associations produced by the Minkowski distance metric and concept similarity computed via the cosine coefficient. In short, informational inference generally uncovers concepts that are carried, or, in some cases, implied by another concept, (or combination of concepts)

A document management methodology based on similarity contents

The advent of the WWW and distributed information systems have made it possible to share documents between different users and organisations. However, this has created many problems related to the security, accessibility, right and most importantly the consistency of documents. It is important that the people involved in the documents management process have access to the most up-to-date version of documents, retrieve the correct documents and should be able to update the documents repository in such a way that his or her document are known to others. In this paper we propose a method for organising, storing and retrieving documents based on similarity contents. The method uses techniques based on information retrieval, document indexation and term extraction and indexing. This methodology is developed for the E-Cognos project which aims at developing tools for the management and sharing of documents in the construction domain

Proceedings of the Workshop Semantic Content Acquisition and Representation (SCAR) 2007

This is the proceedings of the Workshop on Semantic Content Acquisition and Representation, held in conjunction with NODALIDA 2007, on May 24 2007 in Tartu, Estonia.</p

An integrated ranking algorithm for efficient information computing in social networks

Social networks have ensured the expanding disproportion between the face of WWW stored traditionally in search engine repositories and the actual ever changing face of Web. Exponential growth of web users and the ease with which they can upload contents on web highlights the need of content controls on material published on the web. As definition of search is changing, socially-enhanced interactive search methodologies are the need of the hour. Ranking is pivotal for efficient web search as the search performance mainly depends upon the ranking results. In this paper new integrated ranking model based on fused rank of web object based on popularity factor earned over only valid interlinks from multiple social forums is proposed. This model identifies relationships between web objects in separate social networks based on the object inheritance graph. Experimental study indicates the effectiveness of proposed Fusion based ranking algorithm in terms of better search results.Comment: 14 pages, International Journal on Web Service Computing (IJWSC), Vol.3, No.1, March 201

CHORUS Deliverable 2.2: Second report - identification of multi-disciplinary key issues for gap analysis toward EU multimedia search engines roadmap

After addressing the state-of-the-art during the first year of Chorus and establishing the existing landscape in multimedia search engines, we have identified and analyzed gaps within European research effort during our second year. In this period we focused on three directions, notably technological issues, user-centred issues and use-cases and socio- economic and legal aspects. These were assessed by two central studies: firstly, a concerted vision of functional breakdown of generic multimedia search engine, and secondly, a representative use-cases descriptions with the related discussion on requirement for technological challenges. Both studies have been carried out in cooperation and consultation with the community at large through EC concertation meetings (multimedia search engines cluster), several meetings with our Think-Tank, presentations in international conferences, and surveys addressed to EU projects coordinators as well as National initiatives coordinators. Based on the obtained feedback we identified two types of gaps, namely core technological gaps that involve research challenges, and “enablers”, which are not necessarily technical research challenges, but have impact on innovation progress. New socio-economic trends are presented as well as emerging legal challenges

From software APIs to web service ontologies: a semi-automatic extraction method

Successful employment of semantic web services depends on the availability of high quality ontologies to describe the domains of these services. As always, building such ontologies is difficult and costly, thus hampering web service deployment. Our hypothesis is that since the functionality offered by a web service is reflected by the underlying software, domain ontologies could be built by analyzing the documentation of that software. We verify this hypothesis in the domain of RDF ontology storage tools.We implemented and fine-tuned a semi-automatic method to extract domain ontologies from software documentation. The quality of the extracted ontologies was verified against a high quality hand-built ontology of the same domain. Despite the low linguistic quality of the corpus, our method allows extracting a considerable amount of information for a domain ontology