Efficient Iterative Processing in the SciDB Parallel Array Engine

Many scientific data-intensive applications perform iterative computations on array data. There exist multiple engines specialized for array processing. These engines efficiently support various types of operations, but none includes native support for iterative processing. In this paper, we develop a model for iterative array computations and a series of optimizations. We evaluate the benefits of an optimized, native support for iterative array processing on the SciDB engine and real workloads from the astronomy domain

Preparing HPC Applications for the Exascale Era: A Decoupling Strategy

Production-quality parallel applications are often a mixture of diverse operations, such as computation- and communication-intensive, regular and irregular, tightly coupled and loosely linked operations. In conventional construction of parallel applications, each process performs all the operations, which might result inefficient and seriously limit scalability, especially at large scale. We propose a decoupling strategy to improve the scalability of applications running on large-scale systems. Our strategy separates application operations onto groups of processes and enables a dataflow processing paradigm among the groups. This mechanism is effective in reducing the impact of load imbalance and increases the parallel efficiency by pipelining multiple operations. We provide a proof-of-concept implementation using MPI, the de-facto programming system on current supercomputers. We demonstrate the effectiveness of this strategy by decoupling the reduce, particle communication, halo exchange and I/O operations in a set of scientific and data-analytics applications. A performance evaluation on 8,192 processes of a Cray XC40 supercomputer shows that the proposed approach can achieve up to 4x performance improvement.Comment: The 46th International Conference on Parallel Processing (ICPP-2017

Early Accurate Results for Advanced Analytics on MapReduce

Approximate results based on samples often provide the only way in which advanced analytical applications on very massive data sets can satisfy their time and resource constraints. Unfortunately, methods and tools for the computation of accurate early results are currently not supported in MapReduce-oriented systems although these are intended for `big data'. Therefore, we proposed and implemented a non-parametric extension of Hadoop which allows the incremental computation of early results for arbitrary work-flows, along with reliable on-line estimates of the degree of accuracy achieved so far in the computation. These estimates are based on a technique called bootstrapping that has been widely employed in statistics and can be applied to arbitrary functions and data distributions. In this paper, we describe our Early Accurate Result Library (EARL) for Hadoop that was designed to minimize the changes required to the MapReduce framework. Various tests of EARL of Hadoop are presented to characterize the frequent situations where EARL can provide major speed-ups over the current version of Hadoop.Comment: VLDB201

Mapreduce and Heterogeneity: Power-Aware Bag-of-Tasks, Framework Parameter Sensitivity, and Dynamic Cluster Aware Framework Configuration

This dissertation presents the techniques for adaptation of MapReduce frameworks to incorporate heterogeneity-aware scheduling algorithms, an inspection of cluster configurations and how they impact these scheduling algorithms, an analysis regarding how the cluster configuration and the heterogeneity-aware scheduling can work together to minimize turnaround time and/or power consumption of the cluster when executing MapReduce applications, and how these lessons can be applied more broadly to Big Data infrastructure outside of MapReduce that supports multiple Big Data frameworks simultaneously. Heterogeneity exists in various capacities in any given cluster, from static (Physical and Platform) heterogeneity to dynamic heterogeneity (Transient Data, Transient Applications, and Irregular Hardware Behavior). Within the cluster there are historically several types of mitigation strategies for each of these types of heterogeneity, and each has their pros and cons. We discuss these mitigation strategies and the types of heterogeneity each of these strategies is able to address, and the history of the related work in the field. After this, we consider taking host-level metrics and using them to schedule tasks in real time, with a desire to address cluster-wide energy usage. To do this, we consider estimators for power consumption that are available on-chip, namely temperature. We establish a correlation between CPU temperature and power consumption, then derive a scheduling algorithm that eliminates nodes that are consuming too much power from the pool of schedule-able resources. In order to do this we focus on the ability of MapReduce frameworks, constructed as we have constructed the frameworks described in this thesis, to delay binding of tasks to specific workers. We analyze the impacts this has on turnaround time of a MapReduce application, with analysis around setting this threshold properly to reduce impact on turnaround time while shifting power consumption around in the cluster, away from nodes that are over-consuming. We also address concerns with respect to upgrading a cluster in stages, introducing more Physical Heterogeneity at various levels and the types of adjustments that need to be made to MapReduce configurations in order to combat the increased Heterogeneity. In particular, we look at the concerns for MapReduce platform mis-configuration and its impacts on turnaround time, analyzing the ways in which these types of errors can be mitigated between incremental platform upgrades. In an effort to address this, we introduce a Dynamic Heterogeneity Awareness (DHA) module to our MapReduce framework in order to address these upgrades, and allow better spreading of tasks by the framework, in order to further improve turnaround time and resource utilization. Finally we consider the implications for framework and application co-tenancy, and we describe the state of art in these areas. We focus on describing what co-tenancy is, why it\u27s important, and how the state of the art can be expanded to in order to leverage findings from this thesis to make these co-tenant clusters increase application and framework performance as well as improving these clusters with considerations for energy efficiency

Recurring Query Processing on Big Data

The advances in hardware, software, and networks have enabled applications from business enterprises, scientific and engineering disciplines, to social networks, to generate data at unprecedented volume, variety, velocity, and varsity not possible before. Innovation in these domains is thus now hindered by their ability to analyze and discover knowledge from the collected data in a timely and scalable fashion. To facilitate such large-scale big data analytics, the MapReduce computing paradigm and its open-source implementation Hadoop is one of the most popular and widely used technologies. Hadoop\u27s success as a competitor to traditional parallel database systems lies in its simplicity, ease-of-use, flexibility, automatic fault tolerance, superior scalability, and cost effectiveness due to its use of inexpensive commodity hardware that can scale petabytes of data over thousands of machines. Recurring queries, repeatedly being executed for long periods of time on rapidly evolving high-volume data, have become a bedrock component in most of these analytic applications. Efficient execution and optimization techniques must be designed to assure the responsiveness and scalability of these recurring queries. In this dissertation, we thoroughly investigate topics in the area of recurring query processing on big data. In this dissertation, we first propose a novel scalable infrastructure called Redoop that treats recurring query over big evolving data as first class citizens during query processing. This is in contrast to state-of-the-art MapReduce/Hadoop system experiencing significant challenges when faced with recurring queries including redundant computations, significant latencies, and huge application development efforts. Redoop offers innovative window-aware optimization techniques for recurring query execution including adaptive window-aware data partitioning, window-aware task scheduling, and inter-window caching mechanisms. Redoop retains the fault-tolerance of MapReduce via automatic cache recovery and task re-execution support as well. Second, we address the crucial need to accommodate hundreds or even thousands of recurring analytics queries that periodically execute over frequently updated data sets, e.g., latest stock transactions, new log files, or recent news feeds. For many applications, such recurring queries come with user-specified service-level agreements (SLAs), commonly expressed as the maximum allowed latency for producing results before their merits decay. On top of Redoop, we built a scalable multi-query sharing engine tailored for recurring workloads in the MapReduce infrastructure, called Helix. Helix deploys new sliced window-alignment techniques to create sharing opportunities among recurring queries without introducing additional I/O overheads or unnecessary data scans. Furthermore, Helix introduces a cost/benefit model for creating a sharing plan among the recurring queries, and a scheduling strategy for executing them to maximize the SLA satisfaction. Third, recurring analytics queries tend to be expensive, especially when query processing consumes data sets in the hundreds of terabytes or more. Time sensitive recurring queries, such as fraud detection, often come with tight response time constraints as query deadlines. Data sampling is a popular technique for computing approximate results with an acceptable error bound while reducing high-demand resource consumption and thus improving query turnaround times. In this dissertation, we propose the first fast approximate query engine for recurring workloads in the MapReduce infrastructure, called Faro. Faro introduces two key innovations: (1) a deadline-aware sampling strategy that builds samples from the original data with reduced sample sizes compared to uniform sampling, and (2) adaptive resource allocation strategies that maximally improve the approximate results while assuring to still meet the response time requirements specified in recurring queries. In our comprehensive experimental study of each part of this dissertation, we demonstrate the superiority of the proposed strategies over state-of-the-art techniques in scalability, effectiveness, as well as robustness

CloudNotes: Annotation Management in Cloud-Based Platforms

We present an annotation management system for cloud-based platforms, which is called “CloudNotes�. CloudNotes enables the annotation management feature in the scalable Hadoop and MapRedue platforms. In CloudNotes system, every piece of data may have one or more annotations associate with it, and these annotations will be propagated when the data is being transformed through the MapReduce jobs. Such an annotation management system is important for understanding the provenance and quality of data, especially in applications that deal with integration of scientific and biological data at unprecedented scale and complexity. We propose several extensions to the Hadoop platform that allow end-users to add and retrieve annotations seamlessly. Annotations in CloudNotes will be generated, propagated and managed in a distributed manner. We address several challenges that include attaching annotations to data at various granularities in Hadoop, annotating data in flat files with no known schema until query time, and creating and storing the annotations is a distributed fashion. We also present new storage mechanisms and novel indexing techniques that enable adding the annotations in small increments although Hadoop’s file system is optimized for large batch processing

A Platform for Scalable Low-Latency Analytics using MapReduce

Today, the ability to process big data has become crucial to the information needs of many enterprise businesses, scientific applications, and governments. Recently, there have been increasing needs of processing data that is not only big but also fast . Here fast data refers to high-speed real-time and near real-time data streams, such as Twitter feeds, search query streams, click streams, impressions, and system logs. To handle both historical data and real-time data, many companies have to maintain multiple systems. However, recent real-world case studies show that maintaining multiple systems cause not only code duplication, but also intensive manual work to partition the analytics workloads and determine which data is processed by which system. These issues point to the need for a general, unified data processing framework to support analytical queries with different latency requirements. This thesis takes a further step towards building a general, unified system for big and fast data analytics. In order to build such a system, I propose to build on existing solutions on data parallelism and extend them with two new features: incremental processing and stream processing with latency constraints. This thesis starts with Hadoop, the most popular open-source MapReduce implementation, which provides proven scalability based on data parallelism. I answer the following questions: (1) Is Hadoop able to support incremental processing? (2) What are the necessary architecture changes in order to support incremental processing? (3) What are the additional design features needed to support stream processing with latency constraints? The thesis includes three parts that answer each of the questions. The first part of the thesis validates whether the existing MapReduce implementations can support incremental processing. Incremental processing means that computation is performed as soon as the relevant data becomes available. My extensive benchmark study of Hadoop-based MapReduce systems shows that the widely-used sort-merge implementation for partitioning and parallel processing poses a fundamental barrier to incremental computation. I further propose a cost model, and optimize the Hadoop system configuration based on the model. The benchmark results over the optimized system verify that the barrier to incremental computation is intrinsic, and cannot be removed by tuning system parameters. In the second part of the thesis, I employ various purely hash-based techniques to enable fast in-memory incremental processing in MapReduce, and frequent key based techniques to extend such processing to workloads that require memory more than available. I evaluate my Hadoop-based prototype equipped with all proposed techniques. The results show that the hash techniques allow the reduce progress to keep up with the map progress with up to 3 orders of magnitude reduction of internal disk spills, and enable results to be returned early. The third part of the thesis aims to support stream processing with latency constraints based on the incremental processing platform resulted from the second part. I perform a benchmark study to understand the sources of latency. I then propose a number of necessary architecture changes to support stream processing, and augment the platform with new latency-aware model-driven resource planning and latency-aware runtime scheduling techniques to meet user-specified latency constraints while maximizing throughput. Experiments using real-world workloads show that the techniques reduce the latency from tens or hundreds of seconds to sub-second, with 2x-5x increase in throughput. The new platform offers 1-2 orders of magnitude improvements over Storm, a commercial-grade distributed stream system, and Spark Streaming, a state-of-the-art academic prototype, when considering both latency and throughput