Running real time distributed simulations under Linux and CERTI

This paper presents some experiments and some results to enforce real time distributed simulations in accordance with the High Level Architecture (HLA). Simulations were run by using CERTI, an open source middleware, as the Run Time Infrastructure (RTI). Models were distributed over computers under various available versions of the 2.6 Linux kernel. Studies and experiments relied on a real case study. The chosen case study was the simulation of an "in formation" flight of observation satellites. This case study brings up some real applicative needs in real time distributed simulations and real configurations of simulators and models. Two simulations of "in formation" flight of satellites were studied. The study consisted in modeling the behaviour of the simulators and in running these models by using various kernel or middleware operating mechanisms and services. Time measurements were performed at each test giving some results on the ability of the simulation to meet its real time requirements

Simulation of networks of spiking neurons: A review of tools and strategies

We review different aspects of the simulation of spiking neural networks. We start by reviewing the different types of simulation strategies and algorithms that are currently implemented. We next review the precision of those simulation strategies, in particular in cases where plasticity depends on the exact timing of the spikes. We overview different simulators and simulation environments presently available (restricted to those freely available, open source and documented). For each simulation tool, its advantages and pitfalls are reviewed, with an aim to allow the reader to identify which simulator is appropriate for a given task. Finally, we provide a series of benchmark simulations of different types of networks of spiking neurons, including Hodgkin-Huxley type, integrate-and-fire models, interacting with current-based or conductance-based synapses, using clock-driven or event-driven integration strategies. The same set of models are implemented on the different simulators, and the codes are made available. The ultimate goal of this review is to provide a resource to facilitate identifying the appropriate integration strategy and simulation tool to use for a given modeling problem related to spiking neural networks.Comment: 49 pages, 24 figures, 1 table; review article, Journal of Computational Neuroscience, in press (2007

Parallel Astronomical Data Processing with Python: Recipes for multicore machines

High performance computing has been used in various fields of astrophysical research. But most of it is implemented on massively parallel systems (supercomputers) or graphical processing unit clusters. With the advent of multicore processors in the last decade, many serial software codes have been re-implemented in parallel mode to utilize the full potential of these processors. In this paper, we propose parallel processing recipes for multicore machines for astronomical data processing. The target audience are astronomers who are using Python as their preferred scripting language and who may be using PyRAF/IRAF for data processing. Three problems of varied complexity were benchmarked on three different types of multicore processors to demonstrate the benefits, in terms of execution time, of parallelizing data processing tasks. The native multiprocessing module available in Python makes it a relatively trivial task to implement the parallel code. We have also compared the three multiprocessing approaches - Pool/Map, Process/Queue, and Parallel Python. Our test codes are freely available and can be downloaded from our website.Comment: 15 pages, 7 figures, 1 table, "for associated test code, see http://astro.nuigalway.ie/staff/navtejs", Accepted for publication in Astronomy and Computin

3E: Energy-Efficient Elastic Scheduling for Independent Tasks in Heterogeneous Computing Systems

Reducing energy consumption is a major design constraint for modern heterogeneous computing systems to minimize electricity cost, improve system reliability and protect environment. Conventional energy-efficient scheduling strategies developed on these systems do not sufficiently exploit the system elasticity and adaptability for maximum energy savings, and do not simultaneously take account of user expected finish time. In this paper, we develop a novel scheduling strategy named energy-efficient elastic (3E) scheduling for aperiodic, independent and non-real-time tasks with user expected finish times on DVFS-enabled heterogeneous computing systems. The 3E strategy adjusts processors’ supply voltages and frequencies according to the system workload, and makes trade-offs between energy consumption and user expected finish times. Compared with other energy-efficient strategies, 3E significantly improves the scheduling quality and effectively enhances the system elasticity

A comparison of RESTART implementations

The RESTART method is a widely applicable simulation technique for the estimation of rare event probabilities. The method is based on the idea to restart the simulation in certain system states, in order to generate more occurrences of the rare event. One of the main questions for any RESTART implementation is how and when to restart the simulation, in order to achieve the most accurate results for a fixed simulation effort. We investigate and compare, both theoretically and empirically, different implementations of the RESTART method. We find that the original RESTART implementation, in which each path is split into a fixed number of copies, may not be the most efficient one. It is generally better to fix the total simulation effort for each stage of the simulation. Furthermore, given this effort, the best strategy is to restart an equal number of times from each state, rather than to restart each time from a randomly chosen stat