Distributed Processing of Generalized Graph-Pattern Queries in SPARQL 1.1

We propose an efficient and scalable architecture for processing generalized graph-pattern queries as they are specified by the current W3C recommendation of the SPARQL 1.1 "Query Language" component. Specifically, the class of queries we consider consists of sets of SPARQL triple patterns with labeled property paths. From a relational perspective, this class resolves to conjunctive queries of relational joins with additional graph-reachability predicates. For the scalable, i.e., distributed, processing of this kind of queries over very large RDF collections, we develop a suitable partitioning and indexing scheme, which allows us to shard the RDF triples over an entire cluster of compute nodes and to process an incoming SPARQL query over all of the relevant graph partitions (and thus compute nodes) in parallel. Unlike most prior works in this field, we specifically aim at the unified optimization and distributed processing of queries consisting of both relational joins and graph-reachability predicates. All communication among the compute nodes is established via a proprietary, asynchronous communication protocol based on the Message Passing Interface

A Selectivity based approach to Continuous Pattern Detection in Streaming Graphs

Cyber security is one of the most significant technical challenges in current times. Detecting adversarial activities, prevention of theft of intellectual properties and customer data is a high priority for corporations and government agencies around the world. Cyber defenders need to analyze massive-scale, high-resolution network flows to identify, categorize, and mitigate attacks involving networks spanning institutional and national boundaries. Many of the cyber attacks can be described as subgraph patterns, with prominent examples being insider infiltrations (path queries), denial of service (parallel paths) and malicious spreads (tree queries). This motivates us to explore subgraph matching on streaming graphs in a continuous setting. The novelty of our work lies in using the subgraph distributional statistics collected from the streaming graph to determine the query processing strategy. We introduce a "Lazy Search" algorithm where the search strategy is decided on a vertex-to-vertex basis depending on the likelihood of a match in the vertex neighborhood. We also propose a metric named "Relative Selectivity" that is used to select between different query processing strategies. Our experiments performed on real online news, network traffic stream and a synthetic social network benchmark demonstrate 10-100x speedups over selectivity agnostic approaches.Comment: in 18th International Conference on Extending Database Technology (EDBT) (2015

Parallel Implementation of Efficient Search Schemes for the Inference of Cancer Progression Models

The emergence and development of cancer is a consequence of the accumulation over time of genomic mutations involving a specific set of genes, which provides the cancer clones with a functional selective advantage. In this work, we model the order of accumulation of such mutations during the progression, which eventually leads to the disease, by means of probabilistic graphic models, i.e., Bayesian Networks (BNs). We investigate how to perform the task of learning the structure of such BNs, according to experimental evidence, adopting a global optimization meta-heuristics. In particular, in this work we rely on Genetic Algorithms, and to strongly reduce the execution time of the inference -- which can also involve multiple repetitions to collect statistically significant assessments of the data -- we distribute the calculations using both multi-threading and a multi-node architecture. The results show that our approach is characterized by good accuracy and specificity; we also demonstrate its feasibility, thanks to a 84x reduction of the overall execution time with respect to a traditional sequential implementation